Literature DB >> 23585704

A study of different modeling choices for simulating platelets within the immersed boundary method.

Varun Shankar1, Grady B Wright, Aaron L Fogelson, Robert M Kirby.   

Abstract

The Immersed Boundary (IB) method is a widely-used numerical methodology for the simulation of fluid-structure interaction problems. The IB method utilizes an Eulerian discretization for the fluid equations of motion while maintaining a Lagrangian representation of structural objects. Operators are defined for transmitting information (forces and velocities) between these two representations. Most IB simulations represent their structures with piecewise linear approximations and utilize Hookean spring models to approximate structural forces. Our specific motivation is the modeling of platelets in hemodynamic flows. In this paper, we study two alternative representations - radial basis functions (RBFs) and Fourier-based (trigonometric polynomials and spherical harmonics) representations - for the modeling of platelets in two and three dimensions within the IB framework, and compare our results with the traditional piecewise linear approximation methodology. For different representative shapes, we examine the geometric modeling errors (position and normal vectors), force computation errors, and computational cost and provide an engineering trade-off strategy for when and why one might select to employ these different representations.

Entities:  

Keywords:  Fourier-based methods; Immersed boundary methods; Platelet modeling; Radial basis functions

Year:  2013        PMID: 23585704      PMCID: PMC3623290          DOI: 10.1016/j.apnum.2012.09.006

Source DB:  PubMed          Journal:  Appl Numer Math        ISSN: 0168-9274            Impact factor:   2.468


  3 in total

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Authors:  Laura A Miller; Charles S Peskin
Journal:  J Exp Biol       Date:  2004-08       Impact factor: 3.312

2.  A computational fluid dynamics of 'clap and fling' in the smallest insects.

Authors:  Laura A Miller; Charles S Peskin
Journal:  J Exp Biol       Date:  2005-01       Impact factor: 3.312

3.  Modeling three-dimensional morphological structures using spherical harmonics.

Authors:  Li Shen; Hany Farid; Mark A McPeek
Journal:  Evolution       Date:  2009-10-17       Impact factor: 3.694

  3 in total
  2 in total

1.  A Radial Basis Function (RBF)-Finite Difference (FD) Method for Diffusion and Reaction-Diffusion Equations on Surfaces.

Authors:  Varun Shankar; Grady B Wright; Robert M Kirby; Aaron L Fogelson
Journal:  J Sci Comput       Date:  2016-06-01       Impact factor: 2.592

2.  Continuous Modeling of Arterial Platelet Thrombus Formation Using a Spatial Adsorption Equation.

Authors:  Evgenia S Babushkina; Nikolay M Bessonov; Fazoil I Ataullakhanov; Mikhail A Panteleev
Journal:  PLoS One       Date:  2015-10-30       Impact factor: 3.240

  2 in total

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