Literature DB >> 23584766

Bacterial communities associated with subsurface geochemical processes in continental serpentinite springs.

William J Brazelton1, Penny L Morrill, Natalie Szponar, Matthew O Schrenk.   

Abstract

Reactions associated with the geochemical process of serpentinization can generate copious quantities of hydrogen and low-molecular-weight organic carbon compounds, which may provide energy and nutrients to sustain subsurface microbial communities independently of the photosynthetically supported surface biosphere. Previous microbial ecology studies have tested this hypothesis in deep sea hydrothermal vents, such as the Lost City hydrothermal field. This study applied similar methods, including molecular fingerprinting and tag sequencing of the 16S rRNA gene, to ultrabasic continental springs emanating from serpentinizing ultramafic rocks. These molecular surveys were linked with geochemical measurements of the fluids in an interdisciplinary approach designed to distinguish potential subsurface organisms from those derived from surface habitats. The betaproteobacterial genus Hydrogenophaga was identified as a likely inhabitant of transition zones where hydrogen-enriched subsurface fluids mix with oxygenated surface water. The Firmicutes genus Erysipelothrix was most strongly correlated with geochemical factors indicative of subsurface fluids and was identified as the most likely inhabitant of a serpentinization-powered subsurface biosphere. Both of these taxa have been identified in multiple hydrogen-enriched subsurface habitats worldwide, and the results of this study contribute to an emerging biogeographic pattern in which Betaproteobacteria occur in near-surface mixing zones and Firmicutes are present in deeper, anoxic subsurface habitats.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23584766      PMCID: PMC3697581          DOI: 10.1128/AEM.00330-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  41 in total

1.  Deep-sea smokers: windows to a subsurface biosphere?

Authors:  J W Deming; J A Baross
Journal:  Geochim Cosmochim Acta       Date:  1993-07       Impact factor: 5.010

2.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

3.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

Review 4.  Microbial ecology of the dark ocean above, at, and below the seafloor.

Authors:  Beth N Orcutt; Jason B Sylvan; Nina J Knab; Katrina J Edwards
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

5.  Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.

Authors:  Patrick D Schloss; Sarah L Westcott
Journal:  Appl Environ Microbiol       Date:  2011-03-18       Impact factor: 4.792

6.  Metabolic stratification driven by surface and subsurface interactions in a terrestrial mud volcano.

Authors:  Ting-Wen Cheng; Yung-Hsin Chang; Sen-Lin Tang; Ching-Hung Tseng; Pei-Wen Chiang; Kai-Ti Chang; Chih-Hsien Sun; Yue-Gau Chen; Hung-Chi Kuo; Chun-Ho Wang; Pao-Hsuan Chu; Sheng-Rong Song; Pei-Ling Wang; Li-Hung Lin
Journal:  ISME J       Date:  2012-06-28       Impact factor: 10.302

7.  Ironing out the wrinkles in the rare biosphere through improved OTU clustering.

Authors:  Susan M Huse; David Mark Welch; Hilary G Morrison; Mitchell L Sogin
Journal:  Environ Microbiol       Date:  2010-03-11       Impact factor: 5.491

Review 8.  Prokaryotes: the unseen majority.

Authors:  W B Whitman; D C Coleman; W J Wiebe
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

9.  Metagenomic evidence for h(2) oxidation and h(2) production by serpentinite-hosted subsurface microbial communities.

Authors:  William J Brazelton; Bridget Nelson; Matthew O Schrenk
Journal:  Front Microbiol       Date:  2012-01-06       Impact factor: 5.640

10.  SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

Authors:  Elmar Pruesse; Jörg Peplies; Frank Oliver Glöckner
Journal:  Bioinformatics       Date:  2012-05-03       Impact factor: 6.937

View more
  30 in total

1.  Endolithic microbial communities in carbonate precipitates from serpentinite-hosted hyperalkaline springs of the Voltri Massif (Ligurian Alps, Northern Italy).

Authors:  Marianne Quéméneur; Alexandra Palvadeau; Anne Postec; Christophe Monnin; Valérie Chavagnac; Bernard Ollivier; Gaël Erauso
Journal:  Environ Sci Pollut Res Int       Date:  2015-01-27       Impact factor: 4.223

2.  Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars.

Authors:  Shino Suzuki; Shun'ichi Ishii; Tatsuhiko Hoshino; Amanda Rietze; Aaron Tenney; Penny L Morrill; Fumio Inagaki; J Gijs Kuenen; Kenneth H Nealson
Journal:  ISME J       Date:  2017-07-21       Impact factor: 10.302

3.  Heterotrophic communities supplied by ancient organic carbon predominate in deep fennoscandian bedrock fluids.

Authors:  Lotta Purkamo; Malin Bomberg; Mari Nyyssönen; Ilmo Kukkonen; Lasse Ahonen; Merja Itävaara
Journal:  Microb Ecol       Date:  2014-09-27       Impact factor: 4.552

4.  Deep-branching acetogens in serpentinized subsurface fluids of Oman.

Authors:  Daniel R Colman; Emily A Kraus; Patrick H Thieringer; Kaitlin Rempfert; Alexis S Templeton; John R Spear; Eric S Boyd
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-10       Impact factor: 12.779

Review 5.  Advances in Defining Ecosystem Functions of the Terrestrial Subsurface Biosphere.

Authors:  D'Arcy R Meyer-Dombard; Judy Malas
Journal:  Front Microbiol       Date:  2022-06-02       Impact factor: 6.064

6.  Chemolithoautotroph distributions across the subsurface of a convergent margin.

Authors:  Timothy J Rogers; Joy Buongiorno; Gerdhard L Jessen; Matthew O Schrenk; James A Fordyce; J Maarten de Moor; Carlos J Ramírez; Peter H Barry; Mustafa Yücel; Matteo Selci; Angela Cordone; Donato Giovannelli; Karen G Lloyd
Journal:  ISME J       Date:  2022-10-18       Impact factor: 11.217

7.  A metagenomic window into carbon metabolism at 3 km depth in Precambrian continental crust.

Authors:  Cara Magnabosco; Kathleen Ryan; Maggie C Y Lau; Olukayode Kuloyo; Barbara Sherwood Lollar; Thomas L Kieft; Esta van Heerden; Tullis C Onstott
Journal:  ISME J       Date:  2015-09-01       Impact factor: 10.302

8.  Biofilm formation and potential for iron cycling in serpentinization-influenced groundwater of the Zambales and Coast Range ophiolites.

Authors:  D'Arcy R Meyer-Dombard; Caitlin P Casar; Alexander G Simon; Dawn Cardace; Matthew O Schrenk; Carlo A Arcilla
Journal:  Extremophiles       Date:  2018-02-15       Impact factor: 2.395

9.  Procaryotic Diversity and Hydrogenotrophic Methanogenesis in an Alkaline Spring (La Crouen, New Caledonia).

Authors:  Marianne Quéméneur; Nan Mei; Christophe Monnin; Anne Postec; Laura Wils; Manon Bartoli; Sophie Guasco; Bernard Pelletier; Gael Erauso
Journal:  Microorganisms       Date:  2021-06-23

10.  Microbial diversity in a permanently cold and alkaline environment in Greenland.

Authors:  Mikkel A Glaring; Jan K Vester; Jeanette E Lylloff; Waleed Abu Al-Soud; Søren J Sørensen; Peter Stougaard
Journal:  PLoS One       Date:  2015-04-27       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.