Literature DB >> 23581791

Effect of glycerol-water binary mixtures on the structure and dynamics of protein solutions.

Pavan K Ghattyvenkatakrishna1, Gustavo A Carri.   

Abstract

We have performed 20 ns of fully atomistic molecular dynamics simulations of Hen Egg-White Lysozyme in 0, 10, 20, 30, and 100% by weight of glycerol in water to better understand the microscopic physics behind the bioprotection offered by glycerol to naturally occuring biological systems. The solvent exposure of protein surface residues changes when glycerol is introduced. The dynamic behavior of the protein, as quantified by the incoherent intermediate scattering function, shows a nonmonotonic dependence on glycerol content. The fluctuations of the protein residues with respect to each other were found to be similar in all water-containing solvents, but different from the pure glycerol case. The increase in the number of protein-glycerol hydrogen bonds in glycerol-water binary mixtures explains the slowing down of protein dynamics as the glycerol content increases. We also explored the dynamic behavior of the hydration layer. We show that the short length scale dynamics of this layer are insensitive to glycerol concentration. However, the long length scale behavior shows a significant dependence on glycerol content. We also provide insights into the behavior of bound and mobile water molecules.

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Year:  2013        PMID: 23581791     DOI: 10.1080/07391102.2013.773562

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  3 in total

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Journal:  J Mol Model       Date:  2014-10-28       Impact factor: 1.810

2.  Direct observation of coherent oscillations in solution due to microheterogeneous environment.

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Journal:  Sci Rep       Date:  2014-08-18       Impact factor: 4.379

Review 3.  Investigating Structure and Dynamics of Proteins in Amorphous Phases Using Neutron Scattering.

Authors:  Maria Monica Castellanos; Arnold McAuley; Joseph E Curtis
Journal:  Comput Struct Biotechnol J       Date:  2016-12-21       Impact factor: 7.271

  3 in total

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