Literature DB >> 23581642

Diced electrophoresis gel assay for screening enzymes with specified activities.

Toru Komatsu1, Kenjiro Hanaoka, Alexander Adibekian, Kentaro Yoshioka, Takuya Terai, Tasuku Ueno, Mitsuyasu Kawaguchi, Benjamin F Cravatt, Tetsuo Nagano.   

Abstract

We have established the diced electrophoresis gel (DEG) assay as a proteome-wide screening tool to identify enzymes with activities of interest using turnover-based fluorescent substrates. The method utilizes the combination of native polyacrylamide gel electrophoresis (PAGE) with a multiwell-plate-based fluorometric assay to find protein spots with the specified activity. By developing fluorescent substrates that mimic the structure of neutrophil chemoattractants, we could identify enzymes involved in metabolic inactivation of the chemoattractants.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23581642     DOI: 10.1021/ja401792d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Fluorogenic structure activity library pinpoints molecular variations in substrate specificity of structurally homologous esterases.

Authors:  Alex White; Andrew Koelper; Arielle Russell; Erik M Larsen; Charles Kim; Luke D Lavis; Geoffrey C Hoops; R Jeremy Johnson
Journal:  J Biol Chem       Date:  2018-07-13       Impact factor: 5.157

2.  ICBS 2017 in Shanghai-Illuminating Life with Chemical Innovation.

Authors:  Qi Zhang; Jingyu Zhang; Evripidis Gavathiotis
Journal:  ACS Chem Biol       Date:  2018-05-02       Impact factor: 5.100

3.  Rapid and Sensitive Detection of Cancer Cells with Activatable Fluorescent Probes for Enzyme Activity.

Authors:  Kyohhei Fujita; Mako Kamiya; Yasuteru Urano
Journal:  Methods Mol Biol       Date:  2021

4.  Far-red fluorogenic probes for esterase and lipase detection.

Authors:  Katie R Tallman; Kimberly E Beatty
Journal:  Chembiochem       Date:  2014-12-02       Impact factor: 3.164

5.  Rapid imaging of lung cancer using a red fluorescent probe to detect dipeptidyl peptidase 4 and puromycin-sensitive aminopeptidase activities.

Authors:  Shun Kawashima; Daisuke Yoshida; Takafusa Yoshioka; Akira Ogasawara; Kyohhei Fujita; Masahiro Yanagiya; Masaaki Nagano; Chihiro Konoeda; Haruaki Hino; Kentaro Kitano; Masaaki Sato; Rumi Hino; Ryosuke Kojima; Toru Komatsu; Mako Kamiya; Yasuteru Urano; Jun Nakajima
Journal:  Sci Rep       Date:  2022-06-01       Impact factor: 4.996

6.  Measuring the Global Substrate Specificity of Mycobacterial Serine Hydrolases Using a Library of Fluorogenic Ester Substrates.

Authors:  Braden Bassett; Brent Waibel; Alex White; Heather Hansen; Dominique Stephens; Andrew Koelper; Erik M Larsen; Charles Kim; Adam Glanzer; Luke D Lavis; Geoffrey C Hoops; R Jeremy Johnson
Journal:  ACS Infect Dis       Date:  2018-04-16       Impact factor: 5.084

7.  Fluorescence Imaging Using Enzyme-Activatable Probes for Real-Time Identification of Pancreatic Cancer.

Authors:  Ryugen Takahashi; Takeaki Ishizawa; Masumitsu Sato; Yoshinori Inagaki; Mariko Takanka; Yugo Kuriki; Mako Kamiya; Tetsuo Ushiku; Yasuteru Urano; Kiyoshi Hasegawa
Journal:  Front Oncol       Date:  2021-08-19       Impact factor: 6.244

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.