Literature DB >> 23576192

Monitoring of post-translational modification dynamics with genetically encoded fluorescent reporters.

Fabian Hertel1, Jin Zhang.   

Abstract

Post-translational modifications (PTMs) of proteins are essential mechanisms for virtually all dynamic processes within cellular signaling networks. Genetically encoded reporters based on fluorescent proteins (FPs) are powerful tools for spatiotemporal visualization of cellular parameters. Consequently, commonly used modular biosensor designs have been adapted to generate several protein-based indicators for monitoring various PTMs or the activity of corresponding enzymes in living cells, providing new biological insights into dynamics and regulatory functions of individual PTMs. In this review, we describe the application of general design strategies focusing on PTMs and discuss important considerations for engineering feasible indicators depending on the purpose. Moreover, we present developments and enhancements of PTM biosensors from selected studies and give an outlook on future perspectives of this versatile approach.
Copyright © 2013 Wiley Periodicals, Inc.

Entities:  

Keywords:  FRET; biosensor; microscopy

Mesh:

Substances:

Year:  2014        PMID: 23576192      PMCID: PMC3883948          DOI: 10.1002/bip.22254

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  64 in total

1.  Targeted in vivo O-GlcNAc sensors reveal discrete compartment-specific dynamics during signal transduction.

Authors:  Luz D Carrillo; Joshua A Froemming; Lara K Mahal
Journal:  J Biol Chem       Date:  2010-12-07       Impact factor: 5.157

Review 2.  Chromatin modifications and their function.

Authors:  Tony Kouzarides
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 3.  FRET-based biosensors for protein kinases: illuminating the kinome.

Authors:  Jin Zhang; Michael D Allen
Journal:  Mol Biosyst       Date:  2007-08-21

4.  Monitoring ATM kinase activity in living cells.

Authors:  Sam A Johnson; Zhongsheng You; Tony Hunter
Journal:  DNA Repair (Amst)       Date:  2007-04-10

5.  Calcium-dependent regulation of protein kinase D revealed by a genetically encoded kinase activity reporter.

Authors:  Maya T Kunkel; Alex Toker; Roger Y Tsien; Alexandra C Newton
Journal:  J Biol Chem       Date:  2006-12-21       Impact factor: 5.157

6.  Genetically encoded fluorescent indicators to visualize protein phosphorylation by extracellular signal-regulated kinase in single living cells.

Authors:  Moritoshi Sato; Yasutoshi Kawai; Yoshio Umezawa
Journal:  Anal Chem       Date:  2007-01-30       Impact factor: 6.986

7.  Reading dynamic kinase activity in living cells for high-throughput screening.

Authors:  Michael D Allen; Lisa M DiPilato; Meghdad Rahdar; Yunzhao R Ren; Curtis Chong; Jun O Liu; Jin Zhang
Journal:  ACS Chem Biol       Date:  2006-07-21       Impact factor: 5.100

8.  Spatiotemporal analysis of differential Akt regulation in plasma membrane microdomains.

Authors:  Xinxin Gao; Jin Zhang
Journal:  Mol Biol Cell       Date:  2008-08-13       Impact factor: 4.138

9.  A genetically encoded fluorescent sensor of ERK activity.

Authors:  Christopher D Harvey; Anka G Ehrhardt; Cristina Cellurale; Haining Zhong; Ryohei Yasuda; Roger J Davis; Karel Svoboda
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-25       Impact factor: 11.205

10.  Cell-based fluorescent indicator to visualize brain-derived neurotrophic factor secreted from living neurons.

Authors:  Takahiro Nakajima; Moritoshi Sato; Naoko Akaza; Yoshio Umezawa
Journal:  ACS Chem Biol       Date:  2008-06-20       Impact factor: 5.100

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  4 in total

1.  Fluorogenic Photoaffinity Labeling of Proteins in Living Cells.

Authors:  Tewoderos M Ayele; Steve D Knutson; Satheesh Ellipilli; Hyun Hwang; Jennifer M Heemstra
Journal:  Bioconjug Chem       Date:  2019-04-17       Impact factor: 4.774

2.  A GFP-based ratiometric sensor for cellular methionine oxidation.

Authors:  Nikita Kuldyushev; Roland Schönherr; Ina Coburger; Marwa Ahmed; Rama A Hussein; Eric Wiesel; Amod Godbole; Thorsten Pfirrmann; Toshinori Hoshi; Stefan H Heinemann
Journal:  Talanta       Date:  2022-03-03       Impact factor: 6.556

3.  Metabolic labeling in middle-down proteomics allows for investigation of the dynamics of the histone code.

Authors:  Simone Sidoli; Congcong Lu; Mariel Coradin; Xiaoshi Wang; Kelly R Karch; Chrystian Ruminowicz; Benjamin A Garcia
Journal:  Epigenetics Chromatin       Date:  2017-07-06       Impact factor: 4.954

Review 4.  Molecular probes for cellular imaging of post-translational proteoforms.

Authors:  Surased Suraritdechachai; Benya Lakkanasirorat; Chayasith Uttamapinant
Journal:  RSC Chem Biol       Date:  2022-01-04
  4 in total

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