Literature DB >> 23566220

Stability of DNA, RNA, cytomorphology, and immunoantigenicity in Residual ThinPrep Specimens.

Younghye Kim1, Kap Ro Choi, Moon Jung Chae, Bong Kyung Shin, Han Kyeom Kim, Aeree Kim, Baek-Hui Kim.   

Abstract

The aim of this study was to evaluate the quality of residual liquid-based preparation (LBP) sample after cytopathologic diagnosis. Cervical swab, body fluid, and thyroid fine-needle aspiration (FNA) samples preserved in ThinPrep PreservCyt solution were tested. Samples kept frozen at -80 °C and stored at room temperature were tested 12 months after the initial sample collection. Gel electrophotography of GAPDH multiplex PCR, RNA integrity number (RIN) values obtained from Agilent bioanalyzer, cytomorphologic changes, and immunohistochemical staining (cytokeratin, thyroid transcription factor-1 (TTF-1), and D2-40) were used for the evaluation of sample quality. All available samples showed successful amplification products in multiplex PCR. However, RNAs in all residual samples were degraded with low RIN values (RIN < 4). RIN values decreased rapidly when samples were stored at room temperature in LBP medium. Cytomorpholoic evaluation and immunohistochemical staining results revealed no change regardless of storage time or storage temperature. In conclusion, RNAs stored in LBP medium degraded quickly at room temperature. Residual alcohol-based LBP cytologic specimens stored at -80 °C and room temperature showed no change in DNA quality, cytomorphology, and immunoreactivity during at least one year of storage.
© 2013 APMIS Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  DNA; RNA; ThinPrep; liquid-based cytology; quality

Mesh:

Substances:

Year:  2013        PMID: 23566220     DOI: 10.1111/apm.12082

Source DB:  PubMed          Journal:  APMIS        ISSN: 0903-4641            Impact factor:   3.205


  6 in total

1.  Methylated eyes absent 4 (EYA4) gene promotor in non-neoplastic mucosa of ulcerative colitis patients with colorectal cancer: evidence for a field effect.

Authors:  John B Kisiel; Megan M Garrity-Park; William R Taylor; Thomas C Smyrk; David A Ahlquist
Journal:  Inflamm Bowel Dis       Date:  2013-09       Impact factor: 5.325

2.  EUROarray human papillomavirus (HPV) assay is highly concordant with other commercial assays for detection of high-risk HPV genotypes in women with high grade cervical abnormalities.

Authors:  A M Cornall; M Poljak; S M Garland; S Phillips; D A Machalek; J H Tan; M A Quinn; S N Tabrizi
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2016-04-05       Impact factor: 3.267

3.  HPV genotype-specific concordance between EuroArray HPV, Anyplex II HPV28 and Linear Array HPV Genotyping test in Australian cervical samples.

Authors:  Alyssa M Cornall; Marin Poljak; Suzanne M Garland; Samuel Phillips; Dorothy A Machalek; Jeffrey H Tan; Michael A Quinn; Sepehr N Tabrizi
Journal:  Papillomavirus Res       Date:  2017-10-18

4.  Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota.

Authors:  Takeo Shibata; Mayumi Nakagawa; Hannah N Coleman; Sarah M Owens; William W Greenfield; Toshiyuki Sasagawa; Michael S Robeson
Journal:  PLoS One       Date:  2021-08-30       Impact factor: 3.240

Review 5.  Epidemiology of ocular surface squamous neoplasia in Africa.

Authors:  Stephen Gichuhi; Mandeep S Sagoo; Helen A Weiss; Matthew J Burton
Journal:  Trop Med Int Health       Date:  2013-10-30       Impact factor: 2.622

Review 6.  Thyroid Fine-Needle Aspiration Cytology Practice in Korea.

Authors:  Yoon Jin Cha; Ju Yeon Pyo; SoonWon Hong; Jae Yeon Seok; Kyung-Ju Kim; Jee-Young Han; Jeong Mo Bae; Hyeong Ju Kwon; Yeejeong Kim; Kyueng-Whan Min; Soonae Oak; Sunhee Chang
Journal:  J Pathol Transl Med       Date:  2017-10-11
  6 in total

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