Literature DB >> 23565331

Dynamic noise, chaos and parameter estimation in population biology.

N Stollenwerk1, M Aguiar, S Ballesteros, J Boto, B Kooi, L Mateus.   

Abstract

We revisit the parameter estimation framework for population biological dynamical systems, and apply it to calibrate various models in epidemiology with empirical time series, namely influenza and dengue fever. When it comes to more complex models such as multi-strain dynamics to describe the virus-host interaction in dengue fever, even the most recently developed parameter estimation techniques, such as maximum likelihood iterated filtering, reach their computational limits. However, the first results of parameter estimation with data on dengue fever from Thailand indicate a subtle interplay between stochasticity and the deterministic skeleton. The deterministic system on its own already displays complex dynamics up to deterministic chaos and coexistence of multiple attractors.

Entities:  

Keywords:  dengue fever; deterministic chaos; epidemiology; influenza; likelihood; master equation

Year:  2012        PMID: 23565331      PMCID: PMC3293205          DOI: 10.1098/rsfs.2011.0103

Source DB:  PubMed          Journal:  Interface Focus        ISSN: 2042-8898            Impact factor:   3.906


  8 in total

1.  Statistical inference for noisy nonlinear ecological dynamic systems.

Authors:  Simon N Wood
Journal:  Nature       Date:  2010-08-11       Impact factor: 49.962

2.  Inference for nonlinear dynamical systems.

Authors:  E L Ionides; C Bretó; A A King
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-22       Impact factor: 11.205

3.  The role of seasonality and import in a minimalistic multi-strain dengue model capturing differences between primary and secondary infections: complex dynamics and its implications for data analysis.

Authors:  Maíra Aguiar; Sebastien Ballesteros; Bob W Kooi; Nico Stollenwerk
Journal:  J Theor Biol       Date:  2011-09-09       Impact factor: 2.691

4.  A spatially stochastic epidemic model with partial immunization shows in mean field approximation the reinfection threshold.

Authors:  Nico Stollenwerk; Sander van Noort; José Martins; Maíra Aguiar; Frank Hilker; Alberto Pinto; Gabriela Gomes
Journal:  J Biol Dyn       Date:  2010-11       Impact factor: 2.179

5.  Simulation-based model selection for dynamical systems in systems and population biology.

Authors:  Tina Toni; Michael P H Stumpf
Journal:  Bioinformatics       Date:  2009-10-29       Impact factor: 6.937

6.  Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems.

Authors:  Tina Toni; David Welch; Natalja Strelkowa; Andreas Ipsen; Michael P H Stumpf
Journal:  J R Soc Interface       Date:  2009-02-06       Impact factor: 4.118

7.  Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes.

Authors:  Daniel Silk; Paul D W Kirk; Chris P Barnes; Tina Toni; Anna Rose; Simon Moon; Margaret J Dallman; Michael P H Stumpf
Journal:  Nat Commun       Date:  2011-10-04       Impact factor: 14.919

8.  Plug-and-play inference for disease dynamics: measles in large and small populations as a case study.

Authors:  Daihai He; Edward L Ionides; Aaron A King
Journal:  J R Soc Interface       Date:  2009-06-17       Impact factor: 4.118

  8 in total
  6 in total

1.  Towards the marriage of theory and data.

Authors:  Simon A Levin
Journal:  Interface Focus       Date:  2012-02-01       Impact factor: 3.906

2.  Are we modelling the correct dataset? Minimizing false predictions for dengue fever in Thailand.

Authors:  M Aguiar; R Paul; A Sakuntabhai; N Stollenwerk
Journal:  Epidemiol Infect       Date:  2014-11       Impact factor: 2.451

3.  The Impact of the Newly Licensed Dengue Vaccine in Endemic Countries.

Authors:  Maíra Aguiar; Nico Stollenwerk; Scott B Halstead
Journal:  PLoS Negl Trop Dis       Date:  2016-12-21

Review 4.  Integrative modelling for One Health: pattern, process and participation.

Authors:  I Scoones; K Jones; G Lo Iacono; D W Redding; A Wilkinson; J L N Wood
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-07-19       Impact factor: 6.237

Review 5.  Epidemiological risk factors associated with high global frequency of inapparent dengue virus infections.

Authors:  Laura Grange; Etienne Simon-Loriere; Anavaj Sakuntabhai; Lionel Gresh; Richard Paul; Eva Harris
Journal:  Front Immunol       Date:  2014-06-11       Impact factor: 7.561

6.  The Impact of Serotype Cross-Protection on Vaccine Trials: DENVax as a Case Study.

Authors:  Maíra Aguiar; Nico Stollenwerk
Journal:  Vaccines (Basel)       Date:  2020-11-12
  6 in total

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