Literature DB >> 23563421

Updating benchtop sequencing performance comparison.

Sebastian Jünemann, Fritz Joachim Sedlazeck, Karola Prior, Andreas Albersmeier, Uwe John, Jörn Kalinowski, Alexander Mellmann, Alexander Goesmann, Arndt von Haeseler, Jens Stoye, Dag Harmsen.   

Abstract

Mesh：

Year:  2013        PMID： 23563421     DOI： 10.1038/nbt.2522

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  7 in total

1.  Performance comparison of benchtop high-throughput sequencing platforms.

Authors:  Nicholas J Loman; Raju V Misra; Timothy J Dallman; Chrystala Constantinidou; Saheer E Gharbia; John Wain; Mark J Pallen
Journal:  Nat Biotechnol       Date:  2012-05       Impact factor: 54.908

2.  Genome evolution and adaptation in a long-term experiment with Escherichia coli.

Authors:  Jeffrey E Barrick; Dong Su Yu; Sung Ho Yoon; Haeyoung Jeong; Tae Kwang Oh; Dominique Schneider; Richard E Lenski; Jihyun F Kim
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

Review 3.  Assessing the quality of the DNA sequence from the Human Genome Project.

Authors:  A Felsenfeld; J Peterson; J Schloss; M Guyer
Journal:  Genome Res       Date:  1999-01       Impact factor: 9.043

4.  Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

Authors:  T Hayashi; K Makino; M Ohnishi; K Kurokawa; K Ishii; K Yokoyama; C G Han; E Ohtsubo; K Nakayama; T Murata; M Tanaka; T Tobe; T Iida; H Takami; T Honda; C Sasakawa; N Ogasawara; T Yasunaga; S Kuhara; T Shiba; M Hattori; H Shinagawa
Journal:  DNA Res       Date:  2001-02-28       Impact factor: 4.458

5.  A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Authors:  Michael A Quail; Miriam Smith; Paul Coupland; Thomas D Otto; Simon R Harris; Thomas R Connor; Anna Bertoni; Harold P Swerdlow; Yong Gu
Journal:  BMC Genomics       Date:  2012-07-24       Impact factor: 3.969

6.  Performance comparison of whole-genome sequencing platforms.

Authors:  Hugo Y K Lam; Michael J Clark; Rui Chen; Rong Chen; Georges Natsoulis; Maeve O'Huallachain; Frederick E Dewey; Lukas Habegger; Euan A Ashley; Mark B Gerstein; Atul J Butte; Hanlee P Ji; Michael Snyder
Journal:  Nat Biotechnol       Date:  2011-12-18       Impact factor: 68.164

7.  Assembly complexity of prokaryotic genomes using short reads.

Authors:  Carl Kingsford; Michael C Schatz; Mihai Pop
Journal:  BMC Bioinformatics       Date:  2010-01-12       Impact factor: 3.169
  7 in total
  162 in total

1.  Identification of a Novel Genomic Island Associated with vanD-Type Vancomycin Resistance in Six Dutch Vancomycin-Resistant Enterococcus faecium Isolates.

Authors:  Janetta Top; Jan C Sinnige; Ellen C Brouwer; Guido Werner; Jukka Corander; Juliëtte A Severin; Rogier Jansen; E Bathoorn; Marc J M Bonten; John W A Rossen; Rob J L Willems
Journal:  Antimicrob Agents Chemother       Date:  2018-02-23       Impact factor: 5.191

2.  Next-generation sequencing-based multigene mutational screening for acute myeloid leukemia using MiSeq: applicability for diagnostics and disease monitoring.

Authors:  Rajyalakshmi Luthra; Keyur P Patel; Neelima G Reddy; Varan Haghshenas; Mark J Routbort; Michael A Harmon; Bedia A Barkoh; Rashmi Kanagal-Shamanna; Farhad Ravandi; Jorge E Cortes; Hagop M Kantarjian; L Jeffrey Medeiros; Rajesh R Singh
Journal:  Haematologica       Date:  2013-10-18       Impact factor: 9.941

Review 3.  Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions.

Authors:  W Florian Fricke; David A Rasko
Journal:  Nat Rev Genet       Date:  2013-11-26       Impact factor: 53.242

4.  High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.

Authors:  Dianne I Lou; Jeffrey A Hussmann; Ross M McBee; Ashley Acevedo; Raul Andino; William H Press; Sara L Sawyer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-15       Impact factor: 11.205

Review 5.  High-throughput sequencing in mutation detection: A new generation of genotoxicity tests?

Authors:  Alexander Y Maslov; Wilber Quispe-Tintaya; Tatyana Gorbacheva; Ryan R White; Jan Vijg
Journal:  Mutat Res       Date:  2015-04-20       Impact factor: 2.433

6.  Bacterial whole-genome sequencing revisited: portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes.

Authors:  Shana R Leopold; Richard V Goering; Anika Witten; Dag Harmsen; Alexander Mellmann
Journal:  J Clin Microbiol       Date:  2014-04-23       Impact factor: 5.948

Review 7.  Advances in monitoring soil microbial community dynamic and function.

Authors:  K K Nkongolo; R Narendrula-Kotha
Journal:  J Appl Genet       Date:  2020-02-15       Impact factor: 3.240

8.  Clostridioides difficile Whole-genome Sequencing Differentiates Relapse With the Same Strain From Reinfection With a New Strain.

Authors:  Janice Cho; Scott Cunningham; Meng Pu; Ryan J Lennon; Jennifer Dens Higano; Patricio Jeraldo; Priya Sampathkumar; Samantha Shannon; Purna C Kashyap; Robin Patel
Journal:  Clin Infect Dis       Date:  2021-03-01       Impact factor: 9.079

9.  Variable Spontaneous Mutation and Loss of Heterozygosity among Heterozygous Genomes in Yeast.

Authors:  Duong T Nguyen; Baojun Wu; Hongan Long; Nan Zhang; Caitlyn Patterson; Stephen Simpson; Krystalynne Morris; W Kelley Thomas; Michael Lynch; Weilong Hao
Journal:  Mol Biol Evol       Date:  2020-11-01       Impact factor: 16.240

10.  Core genome MLST and resistome analysis of Klebsiella pneumoniae using a clinically amenable workflow.

Authors:  Madiha Fida; Scott A Cunningham; Matthew P Murphy; Robert A Bonomo; Kristine M Hujer; Andrea M Hujer; Barry N Kreiswirth; Nicholas Chia; Patricio R Jeraldo; Heidi Nelson; Nicole M Zinsmaster; Nikhil Toraskar; Weizhong Chang; Robin Patel
Journal:  Diagn Microbiol Infect Dis       Date:  2020-01-21       Impact factor: 2.803
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