Literature DB >> 23559216

Analyzing the meiotic transcriptome using isolated meiocytes of Arabidopsis thaliana.

Changbin Chen1, Ernest F Retzel.   

Abstract

Improved transcriptome sequencing technologies (RNA-seq) have advanced our understanding of the tissue-specific transcriptome landscapes, including those of messenger RNAs, noncoding RNAs and small RNAs. However, transcriptome profiles of plant meiocytes remain challenging due to the lack of efficient methods to enrich meiocytes for the analysis of temporal and spatial gene expression patterns during meiosis. In this chapter, we describe a method to analyze the Arabidopsis meiotic transcriptome using isolated male meiocytes.

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Year:  2013        PMID: 23559216     DOI: 10.1007/978-1-62703-333-6_20

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  Sequencing-based large-scale genomics approaches with small numbers of isolated maize meiocytes.

Authors:  Stefanie Dukowic-Schulze; Anitha Sundararajan; Thiruvarangan Ramaraj; Joann Mudge; Changbin Chen
Journal:  Front Plant Sci       Date:  2014-02-25       Impact factor: 5.753

Review 2.  The meiotic transcriptome architecture of plants.

Authors:  Stefanie Dukowic-Schulze; Changbin Chen
Journal:  Front Plant Sci       Date:  2014-06-05       Impact factor: 5.753

3.  Transcriptomic landscape of prophase I sunflower male meiocytes.

Authors:  Nathalia M V Flórez-Zapata; M H Reyes-Valdés; Fernando Hernandez-Godínez; Octavio Martínez
Journal:  Front Plant Sci       Date:  2014-06-16       Impact factor: 5.753

4.  MeioCapture: an efficient method for staging and isolation of meiocytes in the prophase I sub-stages of meiosis in wheat.

Authors:  Arun S K Shunmugam; Venkatesh Bollina; Stefanie Dukowic-Schulze; Pankaj K Bhowmik; Chris Ambrose; James D Higgins; Curtis Pozniak; Andrew G Sharpe; Kevin Rozwadowski; Sateesh Kagale
Journal:  BMC Plant Biol       Date:  2018-11-21       Impact factor: 4.215

5.  Comparison of meiotic transcriptomes of three maize inbreds with different origins reveals differences in cell cycle and recombination.

Authors:  Nelson Garcia; Lu Yin; Stefanie Dukowic-Schulze; Claire Milsted; Penny M A Kianian; Shahryar Kianian; Wojciech P Pawlowski; Changbin Chen
Journal:  BMC Genomics       Date:  2022-10-12       Impact factor: 4.547

6.  The transcriptome landscape of early maize meiosis.

Authors:  Stefanie Dukowic-Schulze; Anitha Sundararajan; Joann Mudge; Thiruvarangan Ramaraj; Andrew D Farmer; Minghui Wang; Qi Sun; Jaroslaw Pillardy; Shahryar Kianian; Ernest F Retzel; Wojciech P Pawlowski; Changbin Chen
Journal:  BMC Plant Biol       Date:  2014-05-03       Impact factor: 4.215

7.  Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis.

Authors:  Stefanie Dukowic-Schulze; Anitha Sundararajan; Thiruvarangan Ramaraj; Shahryar Kianian; Wojciech P Pawlowski; Joann Mudge; Changbin Chen
Journal:  Front Plant Sci       Date:  2016-06-02       Impact factor: 5.753

  7 in total

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