Literature DB >> 23556409

Simulation studies of structure and edge tension of lipid bilayer edges: effects of tail structure and force-field.

Ana West1, Kevin Ma, Jonathan L Chung, James T Kindt.   

Abstract

Molecular dynamics simulations of lipid bilayer ribbons have been performed to investigate the structures and line tensions associated with free bilayer edges. Simulations carried out for dioleoyl phosphatidylcholine with three different force-field parameter sets yielded edge line tensions of 45 ± 2 pN, over 50% greater than the most recently reported experimentally determined value for this lipid. Edge tensions obtained from simulations of a series of phosphatidylcholine lipid bilayer ribbons with saturated acyl tails of length 12-16 carbons and with monounsaturated acyl tails of length 14-18 carbons could be correlated with the excess area associated with forming the edge, through a two-parameter fit. Saturated-tail lipids underwent local thickening near the edge, producing denser packing that correlated with lower line tensions, while unsaturated-tail lipids showed little or no local thickening. In a dipalmitoyl phosphatidylcholine ribbon initiated in a tilted gel-phase structure, lipid headgroups tended to tilt toward the nearer edge producing a herringbone pattern, an accommodation that may account for the reported edge-induced stabilization of an ordered structure at temperatures near a lipid gel-fluid phase transition.

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Year:  2013        PMID: 23556409     DOI: 10.1021/jp400371k

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  SNARE-mediated membrane fusion arrests at pore expansion to regulate the volume of an organelle.

Authors:  Massimo D'Agostino; Herre Jelger Risselada; Laura J Endter; Véronique Comte-Miserez; Andreas Mayer
Journal:  EMBO J       Date:  2018-08-17       Impact factor: 11.598

2.  What Makes a Good Pore Former: A Study of Synthetic Melittin Derivatives.

Authors:  Aliasghar Sepehri; Leo PeBenito; Almudena Pino-Angeles; Themis Lazaridis
Journal:  Biophys J       Date:  2020-03-03       Impact factor: 4.033

3.  Free energy of hydrophilic and hydrophobic pores in lipid bilayers by free energy perturbation of a restraint.

Authors:  Mayank Dixit; Themis Lazaridis
Journal:  J Chem Phys       Date:  2020-08-07       Impact factor: 3.488

4.  Quantum dots encapsulated within phospholipid membranes: phase-dependent structure, photostability, and site-selective functionalization.

Authors:  Weiwei Zheng; Yang Liu; Ana West; Erin E Schuler; Kevin Yehl; R Brian Dyer; James T Kindt; Khalid Salaita
Journal:  J Am Chem Soc       Date:  2014-01-24       Impact factor: 15.419

5.  Nascent fusion pore opening monitored at single-SNAREpin resolution.

Authors:  Paul Heo; Jeff Coleman; Jean-Baptiste Fleury; James E Rothman; Frederic Pincet
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

  5 in total

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