| Literature DB >> 23554747 |
Amit Kumar Sharma1, Rajeev Kumar Tiwari, Mulayam Singh Gaur.
Abstract
The purpose of this study was to investigate the nuclear magnetic resonance (NMR) assignments of hydrolyzed products extracted from human blood plasma. The correlations between chemical, functional and structural properties of highly toxic pesticides were investigated using the PreADME analysis. We observed that toxic pesticides possessed higher molecular weight and, more hydrogen bond donors and acceptors when compared with less toxic pesticides. The occurrence of functional groups and structural properties was analyzed using (1)H-NMR. The (1)H-NMR spectra of the phosphomethoxy class of pesticides were characterized by methyl resonances at 3.7-3.9 ppm (δ) with the coupling constants of 11-16 Hz (JP-CH3 ). In phosphoethoxy pesticides, the methyl resonance was about 1.4 ppm (δ) with the coupling constant of 10 Hz (JP-CH2 ) and the methylene resonances was 4.2-4.4 ppm (δ) with the coupling constant of 0.8 Hz (JP-CH3 ), respectively. Our study shows that the values of four parameters such as chemical shift, coupling constant, integration and relaxation time correlated with the concentration of toxic pesticides, and can be used to characterise the proton groups in the molecular structures of toxic pesticides.Entities:
Keywords: 1H-NMR; computational tool; data interpretation; nuclear magnetic resonance (NMR) parameter; relaxation time; toxic pesticide
Year: 2012 PMID: 23554747 PMCID: PMC3596067 DOI: 10.7555/JBR.26.20110132
Source DB: PubMed Journal: J Biomed Res ISSN: 1674-8301
Fig. 13D structures of malathion (A), parathion (B) and methyl parathion (C) using the RasMol visualization tool.
The various elements in 3D structure of three pesticides contains hydrogen (white), oxygen (red), carbon (grey), sulphur (yellow), nitrogen (purple) and phosphorous (orange).
PreADME descriptors chart for toxic pesticides
| 3D structure of pesticides | Analysed computational properties of pesticides | Malathion | Parathion | Methyl parathion |
| Ligand 3-D Structure: The 3-D structures of all the three pesticides contain various atoms like hydrogen (white), oxygen (red), carbon (green), sulfur (orange), nitrogen (blue) and phosphorous (pink). | ADMET_BBB | -0.774 | -0.396 | -0.18 |
| ADMET_BBB _Level | 3 | 2 | 2 | |
| ADMET_S olubility | -2.093 | -3.585 | -4.091 | |
| ADMET_S olubility _Level | 3 | 3 | 2 | |
| ADMET_Hepatotoxicity | 0 | 1 | 1 | |
| ADMET_Hepatotoxicity_Probability | 0.139 | 0.629 | 0.523 | |
| ADMET_CYP2D6_Probability | 0.247 | 0.029 | 0.108 | |
| ADMET_PPB_Level | 0 | 0 | 0 | |
| ADMET_AlogP98 | 1.595 | 2.524 | 3.221 | |
| ADMET_PSA_2D | 70.321 | 64.595 | 64.595 | |
| Molecular Descriptors (2D Constitutional Descriptors) | Number of total atoms | 38 | 32 | 26 |
| Number of H atoms | 19 | 14 | 10 | |
| Number of C atoms | 10 | 10 | 8 | |
| Number of N atoms | 0 | 1 | 1 | |
| Number of O atoms | 6 | 5 | 5 | |
| Number of P atoms | 1 | 1 | 1 | |
| Number of S atoms | 2 | 1 | 1 | |
| Fraction of hetero atoms | 0.236842 | 0.250000 | 0.307692 | |
| Molecular weight | 330.350260 | 291.258060 | 263.204460 | |
| Molecular formula | C10H19O6PS2 | C10H14NO5PS | C8H10NO5PS | |
| Number of rigid bonds | 37 | 32 | 26 | |
| Number of total bonds | 37 | 32 | 26 | |
| Number of single bonds | 34 | 24 | 18 | |
| Number of double bonds | 3 | 2 | 2 | |
| Number of C-C bonds | 5 | 2 | 0 | |
| Number of C-O bonds | 6 | 3 | 3 | |
| Number of C=O bonds | 2 | 0 | 0 | |
| Number of C-S bonds | 1 | 0 | 0 | |
| Number of C-H bonds | 19 | 14 | 10 | |
| Number of P-O bonds | 2 | 3 | 3 | |
| Chemical Feature Count | Number of H-bond acceptors | 6 | 5 | 5 |
| Functional Group Count | Number of alcohol groups | 2 | 0 | 0 |
| Number of ether groups | 2 | 0 | 0 | |
| Number of ester groups | 2 | 0 | 0 | |
| Number of 6 member rings | 0 | 1 | 1 | |
| 2D Electrostatic Descriptors (Charged Partial Surface Area Descriptors i.e. Jurs Descriptors) | PPSA1 (partial positive surface area 1st type) | 326.987478 | 147.579800 | 113.456719 |
| PPSA2 (partial positive surface area 2nd type) | 578.937713 | 169.508516 | 127.121870 | |
| PPSA3 (partial positive surface area 3rd type) | 20.181663 | 9.485652 | 9.418458 | |
| PNSA1 (partial negative surface area 1st type) | 146.492709 | 212.513082 | 195.110454 | |
| PNSA2 (partial negative surface area 2nd type) | -632.009335 | -898.187603 | -819.257510 | |
| PNSA3 (partial negative surface area 2nd type | -43.308893 | -38.095599 | -40.074718 | |
| Hydrophobic surface area (MPEOE method) | 313.846235 | 284.087153 | 232.561444 | |
| Positive charged polar surface area (MPEOE method) | 46.149730 | 19.618244 | 19.618244 | |
| Negative charged polar surface area (MPEOE method) | 113.484223 | 56.387485 | 56.387485 | |
| HRNCS (relative negative charged surface area to H-bond acceptors atoms) | 15.189368 | 16.130962 | 16.125670 | |
| Partial Charge of Atom | Qmax (Maximum partial charge) | 0.342842 | 0.344081 | 0.343241 |
| Qmin (Minimum partial charge) | -0.634495 | -0.875633 | -0.876345 | |
| Total positive charge | 1.770520 | 1.148589 | 1.120444 | |
| Total negative charge | -4.314272 | -4.226505 | -4.198942 | |
| Charge polarization | 0.160126 | 0.167972 | 0.204592 | |
| 2D Geometrical Descriptors | Hydrophobic surface area | 274.628332 | 224.731649 | 190.267480 |
| Hydrophobic surface area (saturated group) | 229.152497 | 127.113337 | 92.649168 | |
| Hydrophobic surface area (unsaturated group) | 45.475835 | 97.618312 | 97.618312 | |
| Other group surface area | 29.416996 | 15.158069 | 15.158069 | |
| Polar surface area | 41.473302 | 51.957001 | 51.957001 | |
| H-bond acceptor surface area | 41.473302 | 47.928966 | 47.928966 | |
| H-bond donor surface area | 0.000000 | 0.00000 | 0.000000 | |
| H-bond surface area | 41.473302 | 47.928966 | 47.928966 | |
| 2D Physicochemical Descriptors | Polarizability (Miller method) | 30.498000 | 26.530000 | 22.860000 |
| SK logP (SK atomic types) | 2.225320 | 3.625450 | 2.882770 | |
| Water solubility in pure water (SK atomic types, mg/L) | 582.391 | 25.0569 | 63.4692 | |
| Water solubility in buffer system (SK atomic types, mg/L) | 10.503 | 0.5291 | 2.08965 | |
| SK logVP (SK atomic types, log vapour pressure) | -5.656338 | -4.398758 | -4.104238 | |
| Water solvation free energy (Ghose method) | -3.460000 | 0.150000 | -0.510000 | |
| AlogP98 (Ghose method) | 2.160900 | 3.275900 | 2.578300 | |
| 2D Topological Descriptors | S_hetero atoms | 40.613179 | 35.572852 | 34.510740 |
| S_hydrophobic | 3.240905 | 7.782440 | 5.967146 | |
| S_polar | 44.773520 | 38.719081 | 37.563251 | |
| S_H bond acceptor | 44.773520 | 40.162152 | 39.012001 |
Fig. 21H-NMR spectra of pure malathion (1 ppm) for analysis of hydrolyzed products.
Fig. 31H-NMR spectra of hydrolyzed malathion (1 ppm) sample.
1H-NMR spectral characterization of malathion and hydrolyzed malathion
| H-atom position in the MA structure | Malathion (MA) | H-atom positionin the MA(H)structure | Malathion [MA(H)] | |||||||
| Chemical shift (ppm) | Coupling constant (J in Hz) | Integration | Relaxation time (sec) | Chemical shift (ppm) | Coupling constant (J in Hz) | Integration | Relaxation time (sec) | |||
| aa′ (6H) | Double | 10.0 | 1:10 | 0.2 | aa′ (OH) | ----- | ----- | ----- | ----- | |
| doublet, | bb′ (2H) | Double | 5.0-8.0 | 1:1 | 0.15 | |||||
| 4.205, 4.208, | doublet, | |||||||||
| 4.219, 4.223 | 2.631, 2.604, | |||||||||
| 2.589, 2.574 | ||||||||||
| bb′ (2H) | Double | 5.0-8.0 | 1:3 | 0.15 | ||||||
| doublet, | c (1H) | Singlet, 6.770 | 490-650 | 1:3 | 0.16 | |||||
| 2.98, 3.0, | ||||||||||
| 3.02, 3.04 | ||||||||||
| c (1H) | Singlet, 4.1 | 4.0-6.0 | 1:5 | 0.16 | dd′ (OH) | ----- | ----- | ----- | ----- | |
| dd′ (4H) | Doublet, | 0.8 | 1:3 | 0.25 | ee′ (6H) | Doublet, | 9.0-10.0 | 1:1 | 0.11 | |
| 2.87, 2.88 | 3.719, 3.642 | |||||||||
| ee′ (6H) | Doublet, | 9.0-10.0 | 1:4 | 0.11 | A(1H) | 7.148 | 490-650 | 1:3 | 0.02 | |
| A′ (1H) | 7.133 | 490-650 | 1:3 | 0.02 | ||||||
| A′ (1H) | 7.118 | 490-650 | 1:3 | 0.02 | ||||||
Fig. 41H-NMR spectra of pure methyl parathion (1 ppm) for for analysis of hydrolyzed products.
Fig. 51H-NMR spectra of hydrolyzed methyl parathion (1 ppm) sample.
1H-NMR spectral characterization of methyl parathion and hydrolyzed methyl parathion
| H-atom positionin the MP structure | Methyl Parathion (MP) | H-atom positionin the MP(H)structure | Methyl parathion [MP(H)] | ||||||
| Chemical shift (ppm) | Coupling constant (J in Hz) | Integration | Relaxation time (sec) | Chemical shift (ppm) | Coupling constant (J in Hz) | Integration | Relaxation time (sec) | ||
| aa′ (6H) | Singlet, | 11.0-16.0 | 1:3 | 0.11 | dd′(6H) | Double | 11.0-16.0 | 1:8 | 0.11 |
| bb′ (2H) | Doublet, | 1.0-3.0 | 1:1 | 0.5 | |||||
| cc′ (2H) | Doublet, | 1.0-3.0 | 1:1 | 0.5 | c(lH) | Singlet, | 1.0-3.0 | 2:1 | 0.5 |
| aa′ (2H) | Doublet, | 1.0-3.0 | 1:2 | 0.5 | |||||
| bb′ (2H) | Doublet, | 1.0-3.0 | 1:8 | 0.16 | |||||
Fig. 61H-NMR spectra of pure parathion (1 ppm) for analysis of hydrolyzed products.
1H-NMR spectral characterization of parathion and hydrolyzed parathion
| H-atom positionin the PA structure | Parathion (PA) | H-atom positioiin the PA(H)structure | Parathion [PA(H)] | ||||||
| Chemical shift (ppm) | Coupling constant (J in Hz) | Integration | Relaxation time (sec) | Chemical shift (ppm) | Coupling constant (J in Hz) | Integration | Relaxation time (sec) | ||
| aa′ (6H) | Singlet, | 4.0-6.0 | 1:3 | 0.2 | aa′ bb′ (4H) | Double | 1.0-3.0 | 1:2 | 0.5 |
| bb′ (4H) | Doublet, | 8.0-10.0 | 1:2 | 0.05 | |||||
| c (1H) | 8.313, 8.296 | 1.0-3.0 | 1:1 | 0.5 | |||||
| cc′ (2H) | Doublet, | 6.0-8.0 | 1:1 | 0.05 | dd′ (4H) | Singlet, | 4.0-6.0 | 1:1 | 0.2 |
| ee′ (6H) | Doublet, | 8.0-10.0 | 1:6 | 0.11 | |||||
| dd′ (2H) | Doublet, | 9.0-10.0 | 1:1 | 0.07 | 4.311, 4.297 | ||||
Fig. 71H-NMR spectra of hydrolyzed (1 ppm) parathion sample.
Fig. 8A quantitative plot between concentration (ppm) and proton integration ratio (A) and relaxation time (s) (B) of different pesticides.
MA: malathion; MP: Methyl parathion; PA: Parathion.
1H-NMR spectral characterization of pesticides at different concentration.
| Malathion (MA) | Methyl parathion (MP) | Parathion (PA) | ||||||
| Concentration | Integration | Relaxation time(s) | Concentration | Integration | Relaxation time(s) | Concentration | Integration | Relaxation time(s) |
| 1.0 ppm | 1:10 | 0.2 | 1.0 ppm | 1:3 | 0.11 | 1.0 ppm | 1:3 | 0.2 |
| 2.0 ppm | 1:8 | 0.18 | 2.0 ppm | 1:2 | 0.09 | 2.0 ppm | 1:1 | 0.16 |
| 4.0 ppm | 1:3 | 0.14 | 4.0 ppm | 2:1 | 0.08 | 4.0 ppm | 2:3 | 0.13 |
| 8.0 ppm | 1:1 | 0.11 | 8.0 ppm | 2:3 | 0.06 | 8.0 ppm | 2:5 | 0.09 |