| Literature DB >> 23554652 |
Qian Cui1, Yongxiang Zhang, Jing Su, Chao Shi, Na Lei, Keqin Ding, Jun Li, Rongbin Yu, Lu Wang, Ning Wang.
Abstract
OBJECTIVE: To investigate a possible association of LMP2/LMP7 genes with chronic hepatitis C virus (HCV) infection, and to assess whether LMP2/LMP7 genes could influence the outcomes of HCV infection among drug users.Entities:
Keywords: LMP gene; hepatitis C virus; infection; outcome; polymorphism
Year: 2010 PMID: 23554652 PMCID: PMC3596683 DOI: 10.1016/S1674-8301(10)60050-4
Source DB: PubMed Journal: J Biomed Res ISSN: 1674-8301
Polymorphisms selection and primer sets used for the amplification of LMP2/LMP7
| Gene | Position and substitution of the amino acid | PCR primers(forward/reverse) | Annealing temperature | Enzyme and fragment (bp) | SNP ID |
| 60(GCA→ACA) | 5′-GTGAACCGAGTGTTTGACAAGC-3′ | 57°C | rsl7587 | ||
| 145(CAG→AAG) | 5′-TCATGGCGCTACTAGATGTATG-3′ | 55°C | rs2071543 |
Baseline characteristics of individuals included in the present study
| Variables | Controls ( | Spontaneous clearance ( | Persistent infection ( | |
| Age(mean±SD) | 31.81±8.09 | 32.43±6.15 | 32.63±6.18 | 0.457a |
| Duration of drug use(mean±SD) | 3.72±4.14 | 6.43±3.79 | 7.22±4.31 | 0.000 a |
| Gender | ||||
| male | 157(69.8) | 126(66.7) | 123(71.1) | |
| female | 68(30.2) | 63(33.3) | 50(28.9) | 0.639 b |
| IDU | ||||
| yes | 73(32.4) | 161(85.2) | 137(79.2) | |
| no | 152(67.6) | 28(14.8) | 36(20.8) | 0.000 b |
| Arg | 357(79.3) | 295(78.5) | 276(79.8) | |
| His | 93(20.7) | 81(21.5) | 70(20.2) | 0.906 b |
| Gin | 371(82.4) | 233(67.3) | 289(76.5) | |
| Lys | 79(17.6) | 113(32.7) | 89(23.5) | o.ooo b |
a: one-way ANOVA; b: χ2 test.
[n (%)]
Distribution of LMP2/LMP7 genotypes in each study group
| Genotypes | Controls [ | Spontaneous clearance [ | Persistent infection [ | Controls/Persistent infection | Controls/Spontaneous clearance | Persistent infection/Spontaneous clearance | ||||
| OR(95%CI)* | OR(95%CI)* | OR(95%CI)* | ||||||||
| Arg/Arg | 140(62.2) | 113(59.8) | 112(64.7) | — | l.00(reference) | — | l.00(reference) | — | l.00(reference) | |
| Arg/His | 77(34.2) | 69(36.5) | 52(30.1) | 0.362 | 0.79(0.48-1.31) | 0.947 | 1.02(0.62-1.66) | 0.181 | 0.73(0.47-1.16) | |
| His/His | 8(3.6) | 7 (3.7) | 9(5.2) | 0.497 | 1.53(0.45-5.19) | 0.991 | 0.99(0.27-3.71) | 0.995 | 0.99(0.35-2.85) | |
| Arg/His+His/His | 85(37.8) | 76(40.2) | 61(35.3) | 0.505 | 0.85(0.52-1.38) | 0.952 | 1.02(0.63-1.63) | 0.217 | 0.76(0.49-1.18) | |
| Gln/Gln | 155(68.9) | 112(59.3) | 80(46.2) | — | l.00(reference) | — | l.00(reference) | — | l.00(reference) | |
| Gln/Lys | 61(27.1) | 65(34.4) | 73(42.2) | 0.029 | 1.75(1.06-2.90) | 0.810 | 1.07(0.64-1.77) | 0.032 | 1.64(1.04-2.57) | |
| Lys/Lys | 9(4.0) | 12(6.3) | 20(11.6) | 0.017 | 3.16(1.23-8.12) | 0.343 | 1.68(0.57-4.97) | 0.030 | 2.40(1.09-5.28) | |
| Gln/Lys+Lys/Lys | 70(31.1) | 77(40.7) | 93(53.8) | 0.006 | 1.94(1.21-3.12) | 0.604 | 1.14 (0.70-1.85) | 0.010 | 1.76(1.15-2.69) | |
* Logistic regression model, adjusted by gender, age, injection drug user and duration of drug use.
Stratified analysis of LMP2 gene codon 60 genotypes with chronic HCV infection
| Stratified characteristics | Persistent infection [ | Spontaneous clearance [ | Controls [ | Controls/Persistent infection OR(95%CI)* | Controls/Spontaneous clearance OR(95%CI)* | Persistent infection/Spontaneous clearance OR(95%CI)* | ||||||
| Arg/Arg | Arg/His +His/His | Arg/Arg | Arg/His +His/His | Arg/Arg | Arg/His +His/His | Arg/Arg | Arg/His +His/His | Arg/Arg | Arg/His +His/His | Arg/Arg | Arg/His +His/His | |
| Age (y) | ||||||||||||
| ≤30 | 38(67.9) | 18(32.1) | 52(63.4) | 30(36.6) | 63(60.0) | 42(40.0) | 1.00 | 0.83(0.38-1.82) | 1.00 | 1.15(0.56-2.36) | 1.00 | 0.81(0.39-1.68) |
| >30 | 74(63.2) | 43(36.8) | 61(57.0) | 46(43.0) | 77(64.2) | 43(35.8) | 1.00 | 0.83(0.45-1.54) | 1.00 | 0.97(0.51-1.85) | 1.00 | 0.73(0.42-1.26) |
| Gender | ||||||||||||
| male | 79(64.2) | 44(35.8) | 76(60.3) | 50(39.7) | 95(60.5) | 62(39.5) | 1.00 | 0.87(0.49-1.55) | 1.00 | 0.90(0.50-1.60) | 1.00 | 0.80(0.47-1.35) |
| female | 33(66.0) | 17(34.0) | 37(58.7) | 26(41.3) | 45(66.2) | 23(33.8) | 1.00 | 0.65(0.26-1.62) | 1.00 | 1.25(0.53-2.97) | 1.00 | 0.67(0.30-1.49) |
| IDU | ||||||||||||
| yes | 91(66.4) | 46(33.6) | 95(59.0) | 66(41.0) | 42(57.5) | 31(42.5) | 1.00 | 0.68(0.37-1.26) | 1.00 | 1.04(0.59-1.84) | 1.00 | 0.67(0.41-1.09) |
| no | 21(58.3) | 15(41.7) | 18(54.3) | 10(35.7) | 98(64.5) | 54(35.5) | 1.00 | 1.09(0.50-2.37) | 1.00 | 0.91(0.38-2.16) | 1.00 | 1.24(0.43-3.59) |
| Duration of drug use (y) | ||||||||||||
| ≤5 | 48(81.4) | 11(18.6) | 46(59.7) | 31(40.3) | 95(61.3) | 60(38.7) | 1.00 | 0.25(0.11-0.59) | 1.00 | 0.74(0.38-1.46) | 1.00 | 0.35(0.16-0.78) |
| 5∼10 | 32(54.2) | 27(45.8) | 53(66.2) | 27(33.8) | 26(59.1) | 18(40.9) | 1.00 | 1.52(0.63-3.66) | 1.00 | 0.84(0.35-2.00) | 1.00 | 1.73(0.82-3.64) |
| ≥10 | 32(58.2) | 23(41.8) | 14(43.8) | 18(56.2) | 19(73.1) | 7(26.9) | 1.00 | 2.26(0.76-6.76) | 1.00 | 2.76(0.81-9.39) | 1.00 | 0.54(0.22-1.34) |
* Logistic regression model, adjusted by gender, age, injection drug user, and duration of drug use.
Stratified analysis of LMP7 gene codon 145 genotypes with chronic HCV infection
| Stratified characteristics | Persistent infection [ | Spontaneous Clearance [ | Controls [ | Controls/Persistent infection OR(95%CI)* | Controls/Spontaneous clearance OR(95%CI)* | Persistent infection/Spontaneous clearance OR(95%CI)* | ||||||||
| Gln/Gln | Gln/Lys +Lys/Lys | Gln/Gln | Gln/Lys +Lys/Lys | Gln/Gln | Gln/Lys +Lys/Lys | Gln/Gln | Gln/Lys +Lys/Lys | Gln/Gln | Gln/Lys +Lys/Lys | Gln/Gln | Gln/Lys +Lys/Lys | |||
| Age (y) | ||||||||||||||
| ≤30 | 26(46.4) | 30(53.6) | 45(54.9) | 37(45.1) | 71(67.6) | 34(32.4) | 1.00 | 2.13(0.99-4.56) | 1.00 | 1.20(0.59-2.44) | 1.00 | 1.47(0.74-2.95) | ||
| >30 | 54(46.2) | 63(53.8) | 67(62.6) | 40(37.4) | 84(70.0) | 36(30.0) | 1.00 | 1.91(1.02-3.55) | 1.00 | 1.11(0.57-2.16) | 1.00 | 1.94(1.12-3.34) | ||
| Gender | ||||||||||||||
| male | 54(43.9) | 69(56.1) | 76(60.3) | 50(39.7) | 109(69.4) | 48(30.6) | 1.00 | 2.19(1.24-3.89) | 1.00 | 1.03(0.57-1.86) | 1.00 | 2.02(1.21-3.38) | ||
| female | 26(52.0) | 24(48.0) | 36(57.1) | 27(42.9) | 46(67.6) | 22(32.4) | 1.00 | 1.47(0.61-3.56) | 1.00 | 1.25(0.52-2.99) | 1.00 | 1.30(0.60-2.82) | ||
| IDU | ||||||||||||||
| yes | 60(43.8) | 77(56.2) | 93(57.8) | 68(42.2) | 45(61.6) | 28(38.4) | 1.00 | 1.91(1.05-3.48) | 1.00 | 1.15(0.64-2.04) | 1.00 | 1.78(1.12-2.85) | ||
| no | 20(55.6) | 16(44.4) | 19(67.9) | 9(32.1) | 110(72.4) | 42(27.6) | 1.00 | 1.97(0.90-4.33) | 1.00 | 1.07(0.43-2.65) | 1.00 | 1.63(0.57-4.62) | ||
| Duration of drug use (y) | ||||||||||||||
| ≤5 | 28(47.5) | 31(52.5) | 50(64.9) | 27(35.1) | 112(72.3) | 43(27.7) | 1.00 | 2.86(1.41-5.78) | 1.00 | 1.22(0.61-2.47) | 1.00 | 2.23(1.09-4.58) | ||
| 5∼10 | 26(44.1) | 33(55.9) | 41(51.2) | 39(48.8) | 29(65.9) | 15(34.1) | 1.00 | 1.86(0.77-4.45) | 1.00 | 1.50(0.63-3.56) | 1.00 | 1.51(0.74-3.10) | ||
| ≥10 | 26(47.3) | 29(52.7) | 21(65.6) | 11(34.4) | 14(53.8) | 12(46.2) | 1.00 | 1.18(0.43-3.23) | 1.00 | 0.48(0.14-1.65) | 1.00 | 2.40(0.93-6.21) | ||
* Logistic regression model, adjusted by gender, age, injection drug user and duration of drug use.