Literature DB >> 23545654

Crystallization and preliminary X-ray diffraction analysis of the secreted protein Athe_0614 from Caldicellulosiruptor bescii.

Hiroshi Yokoyama1, Takahiro Yamashita, Naoki Horikoshi, Hitoshi Kurumizaka, Wataru Kagawa.   

Abstract

The Athe_0614 protein is a component of the extracellular proteins secreted by the anaerobic, extremely thermophilic and cellulolytic bacterium Caldicellulosiruptor bescii. The recombinant protein was expressed in Escherichia coli, purified to near-homogeneity and crystallized using polyethylene glycol 2000 monomethyl ether as a precipitant. The crystals belonged to the monoclinic space group P2(1), with unit-cell parameters a = 48.4, b = 42.2, c = 97.8 Å, β = 96.1°, and diffracted to 2.7 Å resolution using synchrotron radiation.

Entities:  

Keywords:  Caldicellulosiruptor bescii; cellulose; secreted proteins

Mesh:

Substances:

Year:  2013        PMID: 23545654      PMCID: PMC3614173          DOI: 10.1107/S174430911300554X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  10 in total

1.  Locating proteins in the cell using TargetP, SignalP and related tools.

Authors:  Olof Emanuelsson; Søren Brunak; Gunnar von Heijne; Henrik Nielsen
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

2.  Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe "Anaerocellum thermophilum" DSM 6725.

Authors:  Sung-Jae Yang; Irina Kataeva; Scott D Hamilton-Brehm; Nancy L Engle; Timothy J Tschaplinski; Crissa Doeppke; Mark Davis; Janet Westpheling; Michael W W Adams
Journal:  Appl Environ Microbiol       Date:  2009-05-22       Impact factor: 4.792

3.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

4.  Biochemical and structural insights into xylan utilization by the thermophilic bacterium Caldanaerobius polysaccharolyticus.

Authors:  Yejun Han; Vinayak Agarwal; Dylan Dodd; Jason Kim; Brian Bae; Roderick I Mackie; Satish K Nair; Isaac K O Cann
Journal:  J Biol Chem       Date:  2012-08-22       Impact factor: 5.157

5.  Degradation of microcrystalline cellulose and non-pretreated plant biomass by a cell-free extracellular cellulase/hemicellulase system from the extreme thermophilic bacterium Caldicellulosiruptor bescii.

Authors:  Sumiyo Kanafusa-Shinkai; Jun'ichi Wakayama; Kazumi Tsukamoto; Noriko Hayashi; Yasumasa Miyazaki; Hideyuki Ohmori; Kiyoshi Tajima; Hiroshi Yokoyama
Journal:  J Biosci Bioeng       Date:  2012-08-23       Impact factor: 2.894

6.  Classification of 'Anaerocellum thermophilum' strain DSM 6725 as Caldicellulosiruptor bescii sp. nov.

Authors:  Sung-Jae Yang; Irina Kataeva; Juergen Wiegel; Yanbin Yin; Phuongan Dam; Ying Xu; Janet Westpheling; Michael W W Adams
Journal:  Int J Syst Evol Microbiol       Date:  2009-10-02       Impact factor: 2.747

Review 7.  The integration of macromolecular diffraction data.

Authors:  Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

8.  Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725.

Authors:  Phuongan Dam; Irina Kataeva; Sung-Jae Yang; Fengfeng Zhou; Yanbin Yin; Wenchi Chou; Farris L Poole; Janet Westpheling; Robert Hettich; Richard Giannone; Derrick L Lewis; Robert Kelly; Harry J Gilbert; Bernard Henrissat; Ying Xu; Michael W W Adams
Journal:  Nucleic Acids Res       Date:  2011-01-11       Impact factor: 16.971

9.  CDD: a Conserved Domain Database for the functional annotation of proteins.

Authors:  Aron Marchler-Bauer; Shennan Lu; John B Anderson; Farideh Chitsaz; Myra K Derbyshire; Carol DeWeese-Scott; Jessica H Fong; Lewis Y Geer; Renata C Geer; Noreen R Gonzales; Marc Gwadz; David I Hurwitz; John D Jackson; Zhaoxi Ke; Christopher J Lanczycki; Fu Lu; Gabriele H Marchler; Mikhail Mullokandov; Marina V Omelchenko; Cynthia L Robertson; James S Song; Narmada Thanki; Roxanne A Yamashita; Dachuan Zhang; Naigong Zhang; Chanjuan Zheng; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2010-11-24       Impact factor: 16.971

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
  10 in total
  4 in total

1.  Extracellular secretion of noncatalytic plant cell wall-binding proteins by the cellulolytic thermophile Caldicellulosiruptor bescii.

Authors:  Hiroshi Yokoyama; Takahiro Yamashita; Riki Morioka; Hideyuki Ohmori
Journal:  J Bacteriol       Date:  2014-08-25       Impact factor: 3.490

2.  Improved Methods for Preparing the Telomere Tethering Complex Bqt1-Bqt2 for Structural Studies.

Authors:  Hidetaka Yuzurihara; Yuuki Aizawa; Mika Saotome; Yuichi Ichikawa; Hiroshi Yokoyama; Yuji Chikashige; Tokuko Haraguchi; Yasushi Hiraoka; Hitoshi Kurumizaka; Wataru Kagawa
Journal:  Protein J       Date:  2020-04       Impact factor: 2.371

3.  Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses.

Authors:  Laura L Lee; Sara E Blumer-Schuette; Javier A Izquierdo; Jeffrey V Zurawski; Andrew J Loder; Jonathan M Conway; James G Elkins; Mircea Podar; Alicia Clum; Piet C Jones; Marek J Piatek; Deborah A Weighill; Daniel A Jacobson; Michael W W Adams; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2018-04-16       Impact factor: 4.792

4.  The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate.

Authors:  Suresh Poudel; Richard J Giannone; Mirko Basen; Intawat Nookaew; Farris L Poole; Robert M Kelly; Michael W W Adams; Robert L Hettich
Journal:  Biotechnol Biofuels       Date:  2018-03-23       Impact factor: 6.040

  4 in total

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