Literature DB >> 23545638

Structure of glutaminyl cyclase from Drosophila melanogaster in space group I4.

Petr Kolenko1, Birgit Koch, Jens Ulrich Rahfeld, Stephan Schilling, Hans Ulrich Demuth, Milton T Stubbs.   

Abstract

The structure of ligand-free glutaminyl cyclase (QC) from Drosophila melanogaster (DmQC) has been determined in a novel crystal form. The protein crystallized in space group I4, with unit-cell parameters a = b = 122.3, c = 72.7 Å. The crystal diffracted to a resolution of 2 Å at the home source. The structure was solved by molecular replacement and was refined to an R factor of 0.169. DmQC exhibits a typical α/β-hydrolase fold. The electron density of three monosaccharides could be localized. The accessibility of the active site will facilitate structural studies of novel inhibitor-binding modes.

Entities:  

Keywords:  Drosophila melanogaster; glutaminyl cyclase; soaking

Mesh:

Substances:

Year:  2013        PMID: 23545638      PMCID: PMC3614157          DOI: 10.1107/S1744309113005575

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

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Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

2.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

3.  A conserved hydrogen-bond network in the catalytic centre of animal glutaminyl cyclases is critical for catalysis.

Authors:  Kai-Fa Huang; Yu-Ruei Wang; En-Cheng Chang; Tsung-Lin Chou; Andrew H-J Wang
Journal:  Biochem J       Date:  2008-04-01       Impact factor: 3.857

4.  Crystal structures of human glutaminyl cyclase, an enzyme responsible for protein N-terminal pyroglutamate formation.

Authors:  Kai-Fa Huang; Yi-Liang Liu; Wei-Ju Cheng; Tzu-Ping Ko; Andrew H-J Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-31       Impact factor: 11.205

5.  Crystal structures of glutaminyl cyclases (QCs) from Drosophila melanogaster reveal active site conservation between insect and mammalian QCs.

Authors:  Birgit Koch; Petr Kolenko; Mirko Buchholz; David Ruiz Carrillo; Christoph Parthier; Michael Wermann; Jens-Ulrich Rahfeld; Gunter Reuter; Stephan Schilling; Milton T Stubbs; Hans-Ulrich Demuth
Journal:  Biochemistry       Date:  2012-09-05       Impact factor: 3.162

6.  The first potent inhibitors for human glutaminyl cyclase: synthesis and structure-activity relationship.

Authors:  Mirko Buchholz; Ulrich Heiser; Stephan Schilling; André J Niestroj; Katrin Zunkel; Hans-Ulrich Demuth
Journal:  J Med Chem       Date:  2006-01-26       Impact factor: 7.446

7.  Identification of human glutaminyl cyclase as a metalloenzyme. Potent inhibition by imidazole derivatives and heterocyclic chelators.

Authors:  Stephan Schilling; André J Niestroj; Jens-Ulrich Rahfeld; Torsten Hoffmann; Michael Wermann; Katrin Zunkel; Claus Wasternack; Hans-Ulrich Demuth
Journal:  J Biol Chem       Date:  2003-09-30       Impact factor: 5.157

8.  Presenting your structures: the CCP4mg molecular-graphics software.

Authors:  S McNicholas; E Potterton; K S Wilson; M E M Noble
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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  1 in total

1.  Structural modelling of the lumenal domain of human GPAA1, the metallo-peptide synthetase subunit of the transamidase complex, reveals zinc-binding mode and two flaps surrounding the active site.

Authors:  Chinh Tran-To Su; Swati Sinha; Birgit Eisenhaber; Frank Eisenhaber
Journal:  Biol Direct       Date:  2020-09-29       Impact factor: 4.540

  1 in total

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