Literature DB >> 23544844

A comprehensive mathematical model for three-body binding equilibria.

Eugene F Douglass1, Chad J Miller, Gerson Sparer, Harold Shapiro, David A Spiegel.   

Abstract

Three-component systems are often more complex than their two-component counterparts. Although the reversible association of three components in solution is critical for a vast array of chemical and biological processes, no general physical picture of such systems has emerged. Here we have developed a general, comprehensive framework for understanding ternary complex equilibria, which relates directly to familiar concepts such as EC50 and IC50 from simpler (binary complex) equilibria. Importantly, application of our model to data from the published literature has enabled us to achieve new insights into complex systems ranging from coagulation to therapeutic dosing regimens for monoclonal antibodies. We also provide an Excel spreadsheet to assist readers in both conceptualizing and applying our models. Overall, our analysis has the potential to render complex three-component systems--which have previously been characterized as "analytically intractable"--readily comprehensible to theoreticians and experimentalists alike.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23544844      PMCID: PMC3717292          DOI: 10.1021/ja311795d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  37 in total

1.  Quantifying the energetics of cooperativity in a ternary protein complex.

Authors:  Peter S Andersen; Peter Schuck; Eric J Sundberg; Carsten Geisler; Klaus Karjalainen; Roy A Mariuzza
Journal:  Biochemistry       Date:  2002-04-23       Impact factor: 3.162

2.  A chemically induced vaccine strategy for prostate cancer.

Authors:  Anna Dubrovska; Chanhyuk Kim; Jimmy Elliott; Weijun Shen; Tun-Hsun Kuo; Dong-In Koo; Chun Li; Tove Tuntland; Jonathan Chang; Todd Groessl; Xu Wu; Vanessa Gorney; Teresa Ramirez-Montagut; David A Spiegel; Charles Y Cho; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2011-09-21       Impact factor: 5.100

3.  Exact analysis of ligand-induced dimerization of monomeric receptors.

Authors:  Eric T Mack; Raquel Perez-Castillejos; Zhigang Suo; George M Whitesides
Journal:  Anal Chem       Date:  2008-06-11       Impact factor: 6.986

4.  Heparin reacts stoichiometrically with thrombin during thrombin inhibition in human plasma.

Authors:  G F Smith; T J Craft
Journal:  Biochem Biophys Res Commun       Date:  1976-08-09       Impact factor: 3.575

5.  Allosteric, chelate, and interannular cooperativity: a mise au point.

Authors:  Gianfranco Ercolani; Luca Schiaffino
Journal:  Angew Chem Int Ed Engl       Date:  2011-01-27       Impact factor: 15.336

6.  Kinetics of two-site immunoradiometric ('sandwich') assays-II. Studies on the nature of the 'high-dose hook effect'.

Authors:  D Rodbard; Y Feldman; M L Jaffe; L E Miles
Journal:  Immunochemistry       Date:  1978-02

7.  Theory of equilibrium binding of asymmetric bivalent haptens to cell surface antibody: application to histamine release from basophils.

Authors:  C Wofsy; B Goldstein; M Dembo
Journal:  J Immunol       Date:  1978-08       Impact factor: 5.422

8.  Scalable rule-based modelling of allosteric proteins and biochemical networks.

Authors:  Julien F Ollivier; Vahid Shahrezaei; Peter S Swain
Journal:  PLoS Comput Biol       Date:  2010-11-04       Impact factor: 4.475

9.  Antibody-dependent cell-mediated cytotoxicity effector-enhanced EphA2 agonist monoclonal antibody demonstrates potent activity against human tumors.

Authors:  Elizabeth M Bruckheimer; Christine A Fazenbaker; Sandra Gallagher; Kathy Mulgrew; Stacy Fuhrmann; Karen T Coffman; William Walsh; Shannon Ready; Kim Cook; Melissa Damschroder; Michael Kinch; Peter A Kiener; Rob Woods; Changshou Gao; William Dall'Acqua; Herren Wu; Steven Coats
Journal:  Neoplasia       Date:  2009-06       Impact factor: 5.715

10.  Calcium enhances heparin catalysis of the antithrombin-factor Xa reaction by a template mechanism. Evidence that calcium alleviates Gla domain antagonism of heparin binding to factor Xa.

Authors:  A R Rezaie
Journal:  J Biol Chem       Date:  1998-07-03       Impact factor: 5.157

View more
  89 in total

1.  Phosphatase specificity and pathway insulation in signaling networks.

Authors:  Michael A Rowland; Brian Harrison; Eric J Deeds
Journal:  Biophys J       Date:  2015-02-17       Impact factor: 4.033

2.  Absolute Ligand Discrimination by Dimeric Signaling Receptors.

Authors:  Sepehr Fathi; Chitra R Nayak; Jordan J Feld; Anton G Zilman
Journal:  Biophys J       Date:  2016-09-06       Impact factor: 4.033

3.  A kinetic proofreading model for bispecific protein degraders.

Authors:  Derek W Bartlett; Adam M Gilbert
Journal:  J Pharmacokinet Pharmacodyn       Date:  2020-10-22       Impact factor: 2.745

4.  The Advantages of Targeted Protein Degradation Over Inhibition: An RTK Case Study.

Authors:  George M Burslem; Blake E Smith; Ashton C Lai; Saul Jaime-Figueroa; Daniel C McQuaid; Daniel P Bondeson; Momar Toure; Hanqing Dong; Yimin Qian; Jing Wang; Andrew P Crew; John Hines; Craig M Crews
Journal:  Cell Chem Biol       Date:  2017-11-09       Impact factor: 8.116

5.  Lessons in PROTAC Design from Selective Degradation with a Promiscuous Warhead.

Authors:  Daniel P Bondeson; Blake E Smith; George M Burslem; Alexandru D Buhimschi; John Hines; Saul Jaime-Figueroa; Jing Wang; Brian D Hamman; Alexey Ishchenko; Craig M Crews
Journal:  Cell Chem Biol       Date:  2017-11-09       Impact factor: 8.116

6.  MHC-I peptide binding activity assessed by exchange after cleavage of peptide covalently linked to β2-microglobulin.

Authors:  Mollie M Jurewicz; Richard A Willis; Vasanthi Ramachandiran; John D Altman; Lawrence J Stern
Journal:  Anal Biochem       Date:  2019-06-13       Impact factor: 3.365

Review 7.  PROteolysis TArgeting Chimeras (PROTACs) - Past, present and future.

Authors:  Mariell Pettersson; Craig M Crews
Journal:  Drug Discov Today Technol       Date:  2019-02-13

8.  Development of Selective Histone Deacetylase 6 (HDAC6) Degraders Recruiting Von Hippel-Lindau (VHL) E3 Ubiquitin Ligase.

Authors:  Ka Yang; Hao Wu; Zhongrui Zhang; Eric D Leisten; Xueqing Nie; Binkai Liu; Zhi Wen; Jing Zhang; Michael D Cunningham; Weiping Tang
Journal:  ACS Med Chem Lett       Date:  2020-03-18       Impact factor: 4.345

9.  RIG-I Uses an ATPase-Powered Translocation-Throttling Mechanism for Kinetic Proofreading of RNAs and Oligomerization.

Authors:  Swapnil C Devarkar; Brandon Schweibenz; Chen Wang; Joseph Marcotrigiano; Smita S Patel
Journal:  Mol Cell       Date:  2018-09-27       Impact factor: 17.970

10.  Modular PROTAC Design for the Degradation of Oncogenic BCR-ABL.

Authors:  Ashton C Lai; Momar Toure; Doris Hellerschmied; Jemilat Salami; Saul Jaime-Figueroa; Eunhwa Ko; John Hines; Craig M Crews
Journal:  Angew Chem Int Ed Engl       Date:  2015-11-23       Impact factor: 15.336

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.