Literature DB >> 23543857

Copy Number Variation within Human β-Defensin Gene Cluster Influences Progression to AIDS in the Multicenter AIDS Cohort Study.

Rajeev K Mehlotra1, Jean-Eudes Dazard, Bangan John, Peter A Zimmerman, Aaron Weinberg, Richard J Jurevic.   

Abstract

STUDY
BACKGROUND: DEFB4/103A encoding β-defensin 2 and 3, respectively, inhibit CXCR4-tropic (X4) viruses in vitro. We determined whether DEFB4/103A Copy Number Variation (CNV) influences time-to-X4 and time-to-AIDS outcomes.
METHODS: We utilized samples from a previously published Multicenter AIDS Cohort Study (MACS), which provides longitudinal account of viral tropism in relation to the full spectrum of rates of disease progression. Using traditional models for time-to-event analysis, we investigated association between DEFB4/103A CNV and the two outcomes, and interaction between DEFB4/103A CNV and disease progression groups, Fast and Slow.
RESULTS: Time-to-X4 and time-to-AIDS were weakly correlated. There was a stronger relationship between these two outcomes for the fast progressors. DEFB4/103A CNV was associated with time-to-AIDS, but not time-to-X4. The association between higher DEFB4/103A CNV and time-to-AIDS was more pronounced for the slow progressors.
CONCLUSION: DEFB4/103A CNV was associated with time-to-AIDS in a disease progression group-specific manner in the MACS cohort. Our findings may contribute to enhancing current understanding of how genetic predisposition influences AIDS progression.

Entities:  

Keywords:  AIDS progression; DEFB103A; DEFB4; MACS; X4 emergence; β-Defensin

Year:  2012        PMID: 23543857      PMCID: PMC3610425          DOI: 10.4172/2155-6113.1000184

Source DB:  PubMed          Journal:  J AIDS Clin Res


  32 in total

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2.  Human beta-defensins suppress human immunodeficiency virus infection: potential role in mucosal protection.

Authors:  Lingling Sun; Catherine M Finnegan; Tina Kish-Catalone; Robert Blumenthal; Paolo Garzino-Demo; Gian M La Terra Maggiore; Sid Berrone; Carol Kleinman; Zhibin Wu; Sayed Abdelwahab; Wuyuan Lu; Alfredo Garzino-Demo
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4.  Human defensin gene copy number polymorphisms: comprehensive analysis of independent variation in alpha- and beta-defensin regions at 8p22-p23.

Authors:  Rose M Linzmeier; Tomas Ganz
Journal:  Genomics       Date:  2005-10       Impact factor: 5.736

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Review 6.  How HIV changes its tropism: evolution and adaptation?

Authors:  Donald E Mosier
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8.  Variation in human β-defensin genes: new insights from a multi-population study.

Authors:  R K Mehlotra; P A Zimmerman; A Weinberg; R J Jurevic
Journal:  Int J Immunogenet       Date:  2012-11-29       Impact factor: 1.466

9.  CCL3L1 copy number variation and susceptibility to HIV-1 infection: a meta-analysis.

Authors:  SiJie Liu; Lei Yao; DongLin Ding; HuanZhang Zhu
Journal:  PLoS One       Date:  2010-12-30       Impact factor: 3.240

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Authors:  Linos Vandekerckhove; Chris Verhofstede; Els Demecheleer; Stephane De Wit; Eric Florence; Katrien Fransen; Michel Moutschen; Wendy Mostmans; Kabamba Kabeya; Nicola Mackie; Jean Plum; Dolores Vaira; Kurt Van Baelen; Ina Vandenbroucke; Veerle Van Eygen; Herwig Van Marck; Dirk Vogelaers; Anna Maria Geretti; Lieven J Stuyver
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  8 in total

Review 1.  Human Genetic Variation and HIV/AIDS in Papua New Guinea: Time to Connect the Dots.

Authors:  Rajeev K Mehlotra
Journal:  Curr HIV/AIDS Rep       Date:  2018-12       Impact factor: 5.071

2.  CCR2, CCR5, and CXCL12 variation and HIV/AIDS in Papua New Guinea.

Authors:  Noemi B Hall; Shannon E Bruse; Bangan John; Rajeev K Mehlotra; Melinda J Blood Zikursh; Catherine M Stein; Peter M Siba; Peter A Zimmerman
Journal:  Infect Genet Evol       Date:  2015-09-28       Impact factor: 3.342

3.  pH modulates the activity and synergism of the airway surface liquid antimicrobials β-defensin-3 and LL-37.

Authors:  Mahmoud H Abou Alaiwa; Leah R Reznikov; Nicholas D Gansemer; Kelsey A Sheets; Alexander R Horswill; David A Stoltz; Joseph Zabner; Michael J Welsh
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-15       Impact factor: 11.205

4.  A preliminary assessment of Toll-like receptor and β-defensin gene polymorphisms in Papua New Guinea - what does it mean for HIV/AIDS?

Authors:  Barne Willie; Janet Gare; Christopher L King; Peter A Zimmerman; Rajeev K Mehlotra
Journal:  P N G Med J       Date:  2017 Mar-Jun

5.  The CNVrd2 package: measurement of copy number at complex loci using high-throughput sequencing data.

Authors:  Hoang T Nguyen; Tony R Merriman; Michael A Black
Journal:  Front Genet       Date:  2014-08-01       Impact factor: 4.599

6.  Association of Toll-like receptor polymorphisms with HIV status in North Americans.

Authors:  B Willie; N B Hall; C M Stein; R J Jurevic; A Weinberg; R K Mehlotra; P A Zimmerman
Journal:  Genes Immun       Date:  2014-09-25       Impact factor: 2.676

7.  Ensemble survival tree models to reveal pairwise interactions of variables with time-to-events outcomes in low-dimensional setting.

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8.  Technical considerations for genotyping multi-allelic copy number variation (CNV), in regions of segmental duplication.

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  8 in total

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