Literature DB >> 23538828

X-ray analysis on the nanogram to microgram scale using porous complexes.

Yasuhide Inokuma1, Shota Yoshioka, Junko Ariyoshi, Tatsuhiko Arai, Yuki Hitora, Kentaro Takada, Shigeki Matsunaga, Kari Rissanen, Makoto Fujita.   

Abstract

X-ray single-crystal diffraction (SCD) analysis has the intrinsic limitation that the target molecules must be obtained as single crystals. Here we report a protocol for SCD analysis that does not require the crystallization of the sample. In our method, tiny crystals of porous complexes are soaked in a solution of the target, such that the complexes can absorb the target molecules. Crystallographic analysis clearly determines the absorbed guest structures along with the host frameworks. Because the SCD analysis is carried out on only one tiny crystal of the complex, the required sample mass is of the nanogram-microgram order. We demonstrate that as little as about 80 nanograms of a sample is enough for the SCD analysis. In combination with high-performance liquid chromatography, our protocol allows the direct characterization of multiple fractions, establishing a prototypical means of liquid chromatography SCD analysis. Furthermore, we unambiguously determined the structure of a scarce marine natural product using only 5 micrograms of the compound.

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Substances:

Year:  2013        PMID: 23538828     DOI: 10.1038/nature11990

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  24 in total

1.  Absolute structure and absolute configuration.

Authors: 
Journal:  Acta Crystallogr A       Date:  1999-09-01       Impact factor: 2.290

2.  Absolute configuration determination of chiral molecules in the solution state using vibrational circular dichroism.

Authors:  Teresa B Freedman; Xiaolin Cao; Rina K Dukor; Laurence A Nafie
Journal:  Chirality       Date:  2003-11       Impact factor: 2.437

3.  Functional porous coordination polymers.

Authors:  Susumu Kitagawa; Ryo Kitaura; Shin-ichiro Noro
Journal:  Angew Chem Int Ed Engl       Date:  2004-04-26       Impact factor: 15.336

4.  Vapor phase inclusion of ferrocene and its derivative in a microporous metal-organic porous material and its structural characterization by single crystal X-ray diffraction.

Authors:  Hyunuk Kim; Hyungphil Chun; Ghyung-Hwa Kim; Heung-Soo Lee; Kimoon Kim
Journal:  Chem Commun (Camb)       Date:  2006-07-14       Impact factor: 6.222

5.  Functional molecular flasks: new properties and reactions within discrete, self-assembled hosts.

Authors:  Michito Yoshizawa; Jeremy K Klosterman; Makoto Fujita
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

6.  A porous coordination network catalyzes an olefin isomerization reaction in the pore.

Authors:  Kazuaki Ohara; Masaki Kawano; Yasuhide Inokuma; Makoto Fujita
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

Review 7.  Crystalline molecular flasks.

Authors:  Yasuhide Inokuma; Masaki Kawano; Makoto Fujita
Journal:  Nat Chem       Date:  2011-05       Impact factor: 24.427

8.  Determination of polymethoxylated flavones in peels of selected Jamaican and Mexican citrus (Citrus spp.) cultivars by high-performance liquid chromatography.

Authors:  Curtis O Green; Andrew O Wheatley; Anthony U Osagie; Errol Y St A Morrison; Helen N Asemota
Journal:  Biomed Chromatogr       Date:  2007-01       Impact factor: 1.902

9.  Selective gas adsorption and separation in metal-organic frameworks.

Authors:  Jian-Rong Li; Ryan J Kuppler; Hong-Cai Zhou
Journal:  Chem Soc Rev       Date:  2009-03-26       Impact factor: 54.564

10.  Formation of a one-dimensional array of oxygen in a microporous metal-organic solid.

Authors:  Ryo Kitaura; Susumu Kitagawa; Yoshiki Kubota; Tatsuo C Kobayashi; Koichi Kindo; Yoshimi Mita; Akira Matsuo; Michihiro Kobayashi; Ho-Chol Chang; Tadashi C Ozawa; Megumi Suzuki; Makoto Sakata; Masaki Takata
Journal:  Science       Date:  2002-12-20       Impact factor: 47.728

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  106 in total

1.  Crystallography without crystals.

Authors:  Allison Doerr
Journal:  Nat Methods       Date:  2013-06       Impact factor: 28.547

2.  Geometric curvature controls the chemical patchiness and self-assembly of nanoparticles.

Authors:  David A Walker; Emily K Leitsch; Rikkert J Nap; Igal Szleifer; Bartosz A Grzybowski
Journal:  Nat Nanotechnol       Date:  2013-08-18       Impact factor: 39.213

Review 3.  Recent trends in the structural revision of natural products.

Authors:  Bhuwan Khatri Chhetri; Serge Lavoie; Anne Marie Sweeney-Jones; Julia Kubanek
Journal:  Nat Prod Rep       Date:  2018-06-20       Impact factor: 13.423

4.  Exploring Applications of Covalent Organic Frameworks: Homogeneous Reticulation of Radicals for Dynamic Nuclear Polarization.

Authors:  Wei Cao; Wei David Wang; Hai-Sen Xu; Ivan V Sergeyev; Jochem Struppe; Xiaoling Wang; Frederic Mentink-Vigier; Zhehong Gan; Ming-Xing Xiao; Lu-Yao Wang; Guo-Peng Chen; San-Yuan Ding; Shi Bai; Wei Wang
Journal:  J Am Chem Soc       Date:  2018-05-25       Impact factor: 15.419

5.  Preparation and guest-uptake protocol for a porous complex useful for 'crystal-free' crystallography.

Authors:  Yasuhide Inokuma; Shota Yoshioka; Junko Ariyoshi; Tatsuhiko Arai; Makoto Fujita
Journal:  Nat Protoc       Date:  2014-01-09       Impact factor: 13.491

6.  Materials science: The hole story.

Authors:  Mark Peplow
Journal:  Nature       Date:  2015-04-09       Impact factor: 49.962

7.  X-ray crystallographic insights into post-synthetic metalation products in a metal-organic framework.

Authors:  Michael T Huxley; Campbell J Coghlan; Witold M Bloch; Alexandre Burgun; Christian J Doonan; Christopher J Sumby
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-01-13       Impact factor: 4.226

8.  The natural productome.

Authors:  Andrea M E Palazzolo; Claire L W Simons; Martin D Burke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

9.  X-ray crystallography: One size fits most.

Authors:  Pierre Stallforth; Jon Clardy
Journal:  Nature       Date:  2013-03-28       Impact factor: 49.962

10.  Minimum Information about a Biosynthetic Gene cluster.

Authors:  Marnix H Medema; Renzo Kottmann; Pelin Yilmaz; Matthew Cummings; John B Biggins; Kai Blin; Irene de Bruijn; Yit Heng Chooi; Jan Claesen; R Cameron Coates; Pablo Cruz-Morales; Srikanth Duddela; Stephanie Düsterhus; Daniel J Edwards; David P Fewer; Neha Garg; Christoph Geiger; Juan Pablo Gomez-Escribano; Anja Greule; Michalis Hadjithomas; Anthony S Haines; Eric J N Helfrich; Matthew L Hillwig; Keishi Ishida; Adam C Jones; Carla S Jones; Katrin Jungmann; Carsten Kegler; Hyun Uk Kim; Peter Kötter; Daniel Krug; Joleen Masschelein; Alexey V Melnik; Simone M Mantovani; Emily A Monroe; Marcus Moore; Nathan Moss; Hans-Wilhelm Nützmann; Guohui Pan; Amrita Pati; Daniel Petras; F Jerry Reen; Federico Rosconi; Zhe Rui; Zhenhua Tian; Nicholas J Tobias; Yuta Tsunematsu; Philipp Wiemann; Elizabeth Wyckoff; Xiaohui Yan; Grace Yim; Fengan Yu; Yunchang Xie; Bertrand Aigle; Alexander K Apel; Carl J Balibar; Emily P Balskus; Francisco Barona-Gómez; Andreas Bechthold; Helge B Bode; Rainer Borriss; Sean F Brady; Axel A Brakhage; Patrick Caffrey; Yi-Qiang Cheng; Jon Clardy; Russell J Cox; René De Mot; Stefano Donadio; Mohamed S Donia; Wilfred A van der Donk; Pieter C Dorrestein; Sean Doyle; Arnold J M Driessen; Monika Ehling-Schulz; Karl-Dieter Entian; Michael A Fischbach; Lena Gerwick; William H Gerwick; Harald Gross; Bertolt Gust; Christian Hertweck; Monica Höfte; Susan E Jensen; Jianhua Ju; Leonard Katz; Leonard Kaysser; Jonathan L Klassen; Nancy P Keller; Jan Kormanec; Oscar P Kuipers; Tomohisa Kuzuyama; Nikos C Kyrpides; Hyung-Jin Kwon; Sylvie Lautru; Rob Lavigne; Chia Y Lee; Bai Linquan; Xinyu Liu; Wen Liu; Andriy Luzhetskyy; Taifo Mahmud; Yvonne Mast; Carmen Méndez; Mikko Metsä-Ketelä; Jason Micklefield; Douglas A Mitchell; Bradley S Moore; Leonilde M Moreira; Rolf Müller; Brett A Neilan; Markus Nett; Jens Nielsen; Fergal O'Gara; Hideaki Oikawa; Anne Osbourn; Marcia S Osburne; Bohdan Ostash; Shelley M Payne; Jean-Luc Pernodet; Miroslav Petricek; Jörn Piel; Olivier Ploux; Jos M Raaijmakers; José A Salas; Esther K Schmitt; Barry Scott; Ryan F Seipke; Ben Shen; David H Sherman; Kaarina Sivonen; Michael J Smanski; Margherita Sosio; Evi Stegmann; Roderich D Süssmuth; Kapil Tahlan; Christopher M Thomas; Yi Tang; Andrew W Truman; Muriel Viaud; Jonathan D Walton; Christopher T Walsh; Tilmann Weber; Gilles P van Wezel; Barrie Wilkinson; Joanne M Willey; Wolfgang Wohlleben; Gerard D Wright; Nadine Ziemert; Changsheng Zhang; Sergey B Zotchev; Rainer Breitling; Eriko Takano; Frank Oliver Glöckner
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

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