Literature DB >> 23537627

RNA in the loop.

Johnny T Y Kung1, Jeannie T Lee.   

Abstract

Long noncoding RNAs (lncRNAs) have been implicated in a variety of biological roles, particularly as cis or trans gene expression regulators. Reporting recently in Nature, Lai et al. (2013) show that a class of gene-activating lncRNAs combines two gene regulation paradigms: enhancer-directed chromosomal looping and RNA-mediated protein effector recruitment.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Year:  2013        PMID： 23537627      PMCID： PMC3777248          DOI： 10.1016/j.devcel.2013.03.009

Source DB:  PubMed          Journal:  Dev Cell        ISSN： 1534-5807            Impact factor:   12.270


  10 in total

Review 1.  Enhancer and promoter interactions-long distance calls.

Authors:  Ivan Krivega; Ann Dean
Journal:  Curr Opin Genet Dev       Date:  2011-12-12       Impact factor: 5.578

Review 2.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 3.  Long noncoding RNAs: past, present, and future.

Authors:  Johnny T Y Kung; David Colognori; Jeannie T Lee
Journal:  Genetics       Date:  2013-03       Impact factor: 4.562

4.  Long noncoding RNAs with enhancer-like function in human cells.

Authors:  Ulf Andersson Ørom; Thomas Derrien; Malte Beringer; Kiranmai Gumireddy; Alessandro Gardini; Giovanni Bussotti; Fan Lai; Matthias Zytnicki; Cedric Notredame; Qihong Huang; Roderic Guigo; Ramin Shiekhattar
Journal:  Cell       Date:  2010-10-01       Impact factor: 41.582

5.  The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.

Authors:  Di Tian; Sha Sun; Jeannie T Lee
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

6.  Gene isoform specificity through enhancer-associated antisense transcription.

Authors:  Courtney S Onodera; Jason G Underwood; Sol Katzman; Frank Jacobs; David Greenberg; Sofie R Salama; David Haussler
Journal:  PLoS One       Date:  2012-08-24       Impact factor: 3.240

7.  Mediator and cohesin connect gene expression and chromatin architecture.

Authors:  Michael H Kagey; Jamie J Newman; Steve Bilodeau; Ye Zhan; David A Orlando; Nynke L van Berkum; Christopher C Ebmeier; Jesse Goossens; Peter B Rahl; Stuart S Levine; Dylan J Taatjes; Job Dekker; Richard A Young
Journal:  Nature       Date:  2010-08-18       Impact factor: 49.962

8.  Activating RNAs associate with Mediator to enhance chromatin architecture and transcription.

Authors:  Fan Lai; Ulf A Orom; Matteo Cesaroni; Malte Beringer; Dylan J Taatjes; Gerd A Blobel; Ramin Shiekhattar
Journal:  Nature       Date:  2013-02-17       Impact factor: 49.962

9.  Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry.

Authors:  Allison M Bond; Michael J W Vangompel; Evgeny A Sametsky; Mary F Clark; Julie C Savage; John F Disterhoft; Jhumku D Kohtz
Journal:  Nat Neurosci       Date:  2009-07-20       Impact factor: 24.884

10.  Landscape of transcription in human cells.

Authors:  Sarah Djebali; Carrie A Davis; Angelika Merkel; Alex Dobin; Timo Lassmann; Ali Mortazavi; Andrea Tanzer; Julien Lagarde; Wei Lin; Felix Schlesinger; Chenghai Xue; Georgi K Marinov; Jainab Khatun; Brian A Williams; Chris Zaleski; Joel Rozowsky; Maik Röder; Felix Kokocinski; Rehab F Abdelhamid; Tyler Alioto; Igor Antoshechkin; Michael T Baer; Nadav S Bar; Philippe Batut; Kimberly Bell; Ian Bell; Sudipto Chakrabortty; Xian Chen; Jacqueline Chrast; Joao Curado; Thomas Derrien; Jorg Drenkow; Erica Dumais; Jacqueline Dumais; Radha Duttagupta; Emilie Falconnet; Meagan Fastuca; Kata Fejes-Toth; Pedro Ferreira; Sylvain Foissac; Melissa J Fullwood; Hui Gao; David Gonzalez; Assaf Gordon; Harsha Gunawardena; Cedric Howald; Sonali Jha; Rory Johnson; Philipp Kapranov; Brandon King; Colin Kingswood; Oscar J Luo; Eddie Park; Kimberly Persaud; Jonathan B Preall; Paolo Ribeca; Brian Risk; Daniel Robyr; Michael Sammeth; Lorian Schaffer; Lei-Hoon See; Atif Shahab; Jorgen Skancke; Ana Maria Suzuki; Hazuki Takahashi; Hagen Tilgner; Diane Trout; Nathalie Walters; Huaien Wang; John Wrobel; Yanbao Yu; Xiaoan Ruan; Yoshihide Hayashizaki; Jennifer Harrow; Mark Gerstein; Tim Hubbard; Alexandre Reymond; Stylianos E Antonarakis; Gregory Hannon; Morgan C Giddings; Yijun Ruan; Barbara Wold; Piero Carninci; Roderic Guigó; Thomas R Gingeras
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962
  10 in total
  6 in total

Review 1.  The functions and unique features of long intergenic non-coding RNA.

Authors:  Julia D Ransohoff; Yuning Wei; Paul A Khavari
Journal:  Nat Rev Mol Cell Biol       Date:  2017-11-15       Impact factor: 94.444

Review 2.  RNA-protein interactions: disorder, moonlighting and junk contribute to eukaryotic complexity.

Authors:  Anna Balcerak; Alicja Trebinska-Stryjewska; Ryszard Konopinski; Maciej Wakula; Ewa Anna Grzybowska
Journal:  Open Biol       Date:  2019-06-19       Impact factor: 6.411

3.  Identification and Validation of a Prognostic Prediction Model of m6A Regulator-Related LncRNAs in Hepatocellular Carcinoma.

Authors:  Chen Jin; Rui Li; Tuo Deng; Jialiang Li; Yan Yang; Haoqi Li; Kaiyu Chen; Huihua Xiong; Gang Chen; Yi Wang
Journal:  Front Mol Biosci       Date:  2021-12-20

4.  P14AS upregulates gene expression in the CDKN2A/2B locus through competitive binding to PcG protein CBX7.

Authors:  Zhuoqi Li; Juanli Qiao; Wanru Ma; Jing Zhou; Liankun Gu; Dajun Deng; Baozhen Zhang
Journal:  Front Cell Dev Biol       Date:  2022-09-13

5.  Identification and validation of a prognostic model of necroptosis-related lncRNAs in hepatocellular carcinoma.

Authors:  Min Chen; Guang-Bo Wu; Shan Hua; Zhi-Feng Zhao; Hong-Jie Li; Meng Luo
Journal:  Front Genet       Date:  2022-09-29       Impact factor: 4.772

6.  LncRNA BLAT1 is Upregulated in Basal-like Breast Cancer through Epigenetic Modifications.

Authors:  Yoo Jane Han; Sonja M Boatman; Jing Zhang; Xinxin C Du; Albert C Yeh; Yonglan Zheng; Jeffrey Mueller; Olufunmilayo I Olopade
Journal:  Sci Rep       Date:  2018-10-22       Impact factor: 4.379
  6 in total

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