Literature DB >> 23536180

Molecular architecture of a sodium channel S6 helix: radial tuning of the voltage-gated sodium channel 1.7 activation gate.

Yang Yang1, Mark Estacion, Sulayman D Dib-Hajj, Stephen G Waxman.   

Abstract

BACKGROUND: In-frame deletion mutation (Del-L955) in NaV1.7 sodium channel from a kindred with erythromelalgia hyperpolarizes activation.
RESULTS: Del-L955 twists the S6 helix, displacing the Phe960 activation gate. Replacement of Phe960 at the correct helical position depolarizes activation.
CONCLUSION: Radial tuning of the activation gate is critical to the activation of NaV1.7 channel. SIGNIFICANCE: Structural modeling guided electrophysiology reveals the functional importance of radial tuning of the S6 segment. Voltage-gated sodium (NaV) channels are membrane proteins that consist of 24 transmembrane segments organized into four homologous domains and are essential for action potential generation and propagation. Although the S6 helices of NaV channels line the ion-conducting pore and participate in channel activation, their functional architecture is incompletely understood. Our recent studies show that a naturally occurring in-frame deletion mutation (Del-L955) of NaV1.7 channel, identified in individuals with a severe inherited pain syndrome (inherited erythromelalgia) causes a substantial hyperpolarizing shift of channel activation. Here we took advantage of this deletion mutation to understand the role of the S6 helix in the channel activation. Based on the recently published structure of a bacterial NaV channel (NaVAb), we modeled the WT and Del-L955 channel. Our structural model showed that Del-L955 twists the DII/S6 helix, shifting location and radial orientation of the activation gate residue (Phe(960)). Hypothesizing that these structural changes produce the shift of channel activation of Del-L955 channels, we restored a phenylalanine in wild-type orientation by mutating Ser(961) (Del-L955/S961F), correcting activation by ∼10 mV. Correction of the displaced Phe(960) (F960S) together with introduction of the rescuing activation gate residue (S961F) produced an additional ∼6-mV restoration of activation of the mutant channel. A simple point mutation in the absence of a twist (L955A) did not produce a radial shift and did not hyperpolarize activation. Our results demonstrate the functional importance of radial tuning of the sodium channel S6 helix for the channel activation.

Entities:  

Keywords:  Biophysics; Electrophysiology; Ion Channels; Molecular Modeling; Mutagenesis; Pain; Sodium Channels

Mesh:

Substances:

Year:  2013        PMID: 23536180      PMCID: PMC3650411          DOI: 10.1074/jbc.M113.462366

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  39 in total

1.  Clockwise domain arrangement of the sodium channel revealed by (mu)-conotoxin (GIIIA) docking orientation.

Authors:  R A Li; I L Ennis; R J French; S C Dudley; G F Tomaselli; E Marbán
Journal:  J Biol Chem       Date:  2001-01-11       Impact factor: 5.157

2.  Molecular determinants of voltage-dependent gating and binding of pore-blocking drugs in transmembrane segment IIIS6 of the Na(+) channel alpha subunit.

Authors:  V Yarov-Yarovoy; J Brown; E M Sharp; J J Clare; T Scheuer; W A Catterall
Journal:  J Biol Chem       Date:  2001-01-05       Impact factor: 5.157

3.  Distinct repriming and closed-state inactivation kinetics of Nav1.6 and Nav1.7 sodium channels in mouse spinal sensory neurons.

Authors:  Raimund I Herzog; Theodore R Cummins; Farshid Ghassemi; Sulayman D Dib-Hajj; Stephen G Waxman
Journal:  J Physiol       Date:  2003-07-03       Impact factor: 5.182

4.  Slow closed-state inactivation: a novel mechanism underlying ramp currents in cells expressing the hNE/PN1 sodium channel.

Authors:  T R Cummins; J R Howe; S G Waxman
Journal:  J Neurosci       Date:  1998-12-01       Impact factor: 6.167

5.  A mutation in segment IVS6 disrupts fast inactivation of sodium channels.

Authors:  J C McPhee; D S Ragsdale; T Scheuer; W A Catterall
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-06       Impact factor: 11.205

6.  Electrophysiological properties of mutant Nav1.7 sodium channels in a painful inherited neuropathy.

Authors:  Theodore R Cummins; Sulayman D Dib-Hajj; Stephen G Waxman
Journal:  J Neurosci       Date:  2004-09-22       Impact factor: 6.167

7.  Tryptophan scanning of D1S6 and D4S6 C-termini in voltage-gated sodium channels.

Authors:  Sho-Ya Wang; Kaitlin Bonner; Corinna Russell; Ging Kuo Wang
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

8.  Molecular basis of an inherited epilepsy.

Authors:  Christoph Lossin; Dao W Wang; Thomas H Rhodes; Carlos G Vanoye; Alfred L George
Journal:  Neuron       Date:  2002-06-13       Impact factor: 17.173

9.  Mutations in SCN9A, encoding a sodium channel alpha subunit, in patients with primary erythermalgia.

Authors:  Y Yang; Y Wang; S Li; Z Xu; H Li; L Ma; J Fan; D Bu; B Liu; Z Fan; G Wu; J Jin; B Ding; X Zhu; Y Shen
Journal:  J Med Genet       Date:  2004-03       Impact factor: 6.318

10.  TM-align: a protein structure alignment algorithm based on the TM-score.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Nucleic Acids Res       Date:  2005-04-22       Impact factor: 16.971

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  7 in total

Review 1.  S-glutathionylation of ion channels: insights into the regulation of channel functions, thiol modification crosstalk, and mechanosensing.

Authors:  Yang Yang; Xin Jin; Chun Jiang
Journal:  Antioxid Redox Signal       Date:  2013-08-20       Impact factor: 8.401

2.  Reverse pharmacogenomics: carbamazepine normalizes activation and attenuates thermal hyperexcitability of sensory neurons due to Nav 1.7 mutation I234T.

Authors:  Yang Yang; Talia Adi; Philip R Effraim; Lubin Chen; Sulayman D Dib-Hajj; Stephen G Waxman
Journal:  Br J Pharmacol       Date:  2017-07-30       Impact factor: 8.739

3.  Single amino acid deletion in transmembrane segment D4S6 of sodium channel Scn8a (Nav1.6) in a mouse mutant with a chronic movement disorder.

Authors:  Julie M Jones; Louise Dionne; James Dell'Orco; Rachel Parent; Jamie N Krueger; Xiaoyang Cheng; Sulayman D Dib-Hajj; Rosie K Bunton-Stasyshyn; Lisa M Sharkey; James J Dowling; Geoffrey G Murphy; Vikram G Shakkottai; Peter Shrager; Miriam H Meisler
Journal:  Neurobiol Dis       Date:  2016-01-22       Impact factor: 5.996

4.  Network topology of NaV1.7 mutations in sodium channel-related painful disorders.

Authors:  Dimos Kapetis; Jenny Sassone; Yang Yang; Barbara Galbardi; Markos N Xenakis; Ronald L Westra; Radek Szklarczyk; Patrick Lindsey; Catharina G Faber; Monique Gerrits; Ingemar S J Merkies; Sulayman D Dib-Hajj; Massimo Mantegazza; Stephen G Waxman; Giuseppe Lauria
Journal:  BMC Syst Biol       Date:  2017-02-24

5.  Hydropathicity-based prediction of pain-causing NaV1.7 variants.

Authors:  Makros N Xenakis; Dimos Kapetis; Yang Yang; Monique M Gerrits; Jordi Heijman; Stephen G Waxman; Giuseppe Lauria; Catharina G Faber; Ronald L Westra; Patrick J Lindsey; Hubert J Smeets
Journal:  BMC Bioinformatics       Date:  2021-04-23       Impact factor: 3.169

6.  Clinical and Functional Features of Epilepsy-Associated In-Frame Deletion Variants in SCN1A.

Authors:  Jing-Yang Wang; Bin Tang; Wen-Xiang Sheng; Li-Dong Hua; Yang Zeng; Cui-Xia Fan; Wei-Yi Deng; Mei-Mei Gao; Wei-Wen Zhu; Na He; Tao Su
Journal:  Front Mol Neurosci       Date:  2022-03-14       Impact factor: 5.639

Review 7.  Primary erythromelalgia: a review.

Authors:  Zhaoli Tang; Zhao Chen; Beisha Tang; Hong Jiang
Journal:  Orphanet J Rare Dis       Date:  2015-09-30       Impact factor: 4.123

  7 in total

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