Literature DB >> 23534394

Comparison of in silico models for prediction of mutagenicity.

Nazanin G Bakhtyari1, Giuseppa Raitano, Emilio Benfenati, Todd Martin, Douglas Young.   

Abstract

Using a dataset with more than 6000 compounds, the performance of eight quantitative structure activity relationships (QSAR) models was evaluated: ACD/Tox Suite, Absorption, Distribution, Metabolism, Elimination, and Toxicity of chemical substances (ADMET) predictor, Derek, Toxicity Estimation Software Tool (T.E.S.T.), TOxicity Prediction by Komputer Assisted Technology (TOPKAT), Toxtree, CEASAR, and SARpy (SAR in python). In general, the results showed a high level of performance. To have a realistic estimate of the predictive ability, the results for chemicals inside and outside the training set for each model were considered. The effect of applicability domain tools (when available) on the prediction accuracy was also evaluated. The predictive tools included QSAR models, knowledge-based systems, and a combination of both methods. Models based on statistical QSAR methods gave better results.

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Year:  2013        PMID: 23534394     DOI: 10.1080/10590501.2013.763576

Source DB:  PubMed          Journal:  J Environ Sci Health C Environ Carcinog Ecotoxicol Rev        ISSN: 1059-0501            Impact factor:   3.781


  8 in total

1.  Integrating publicly available information to screen potential candidates for chemical prioritization under the Toxic Substances Control Act: A proof of concept case study using genotoxicity and carcinogenicity.

Authors:  Grace Patlewicz; Jeffry L Dean; Catherine F Gibbons; Richard S Judson; Nagalakshmi Keshava; Leora Vegosen; Todd M Martin; Prachi Pradeep; Anita Simha; Sarah H Warren; Maureen R Gwinn; David M DeMarini
Journal:  Comput Toxicol       Date:  2021-11-01

2.  Using VEGAHUB Within a Weight-of-Evidence Strategy.

Authors:  Serena Manganelli; Alessio Gamba; Erika Colombo; Emilio Benfenati
Journal:  Methods Mol Biol       Date:  2022

3.  Evaluation of Existing QSAR Models and Structural Alerts and Development of New Ensemble Models for Genotoxicity Using a Newly Compiled Experimental Dataset.

Authors:  Prachi Pradeep; Richard Judson; David M DeMarini; Nagalakshmi Keshava; Todd M Martin; Jeffry Dean; Catherine F Gibbons; Anita Simha; Sarah H Warren; Maureen R Gwinn; Grace Patlewicz
Journal:  Comput Toxicol       Date:  2021-05-01

4.  Design, Synthesis and Biological Evaluation of 2-(2-Amino-5(6)-nitro-1H-benzimidazol-1-yl)-N-arylacetamides as Antiprotozoal Agents.

Authors:  Emanuel Hernández-Núñez; Hugo Tlahuext; Rosa Moo-Puc; Diego Moreno; María Ortencia González-Díaz; Gabriel Navarrete Vázquez
Journal:  Molecules       Date:  2017-04-04       Impact factor: 4.411

5.  Novel tetrahydroacridine derivatives with iodobenzoic moieties induce G0/G1 cell cycle arrest and apoptosis in A549 non-small lung cancer and HT-29 colorectal cancer cells.

Authors:  Małgorzata Girek; Karol Kłosiński; Bartłomiej Grobelski; Stefania Pizzimenti; Marie Angele Cucci; Martina Daga; Giuseppina Barrera; Zbigniew Pasieka; Kamila Czarnecka; Paweł Szymański
Journal:  Mol Cell Biochem       Date:  2019-07-16       Impact factor: 3.396

6.  Identification of Natural Products as SENP2 Inhibitors for Targeted Therapy in Heart Failure.

Authors:  Somayye Taghvaei; Farzaneh Sabouni; Zarrin Minuchehr
Journal:  Front Pharmacol       Date:  2022-04-01       Impact factor: 5.988

7.  Characterization of Phase I Hepatic Metabolites of Anti-Premature Ejaculation Drug Dapoxetine by UHPLC-ESI-Q-TOF.

Authors:  Robert Skibiński; Jakub Trawiński; Maciej Gawlik
Journal:  Molecules       Date:  2021-06-22       Impact factor: 4.411

Review 8.  Predicting mammalian metabolism and toxicity of pesticides in silico.

Authors:  Robert D Clark
Journal:  Pest Manag Sci       Date:  2018-05-15       Impact factor: 4.845

  8 in total

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