Literature DB >> 23531151

Direct evidence for hydrogen bonding in glycans: a combined NMR and molecular dynamics study.

Marcos D Battistel1, Robert Pendrill, Göran Widmalm, Darón I Freedberg.   

Abstract

We introduce the abundant hydroxyl groups of glycans as NMR handles and structural probes to expand the repertoire of tools for structure-function studies on glycans in solution. To this end, we present the facile detection and assignment of hydroxyl groups in a wide range of sample concentrations (0.5-1700 mM) and temperatures, ranging from -5 to 25 °C. We then exploit this information to directly detect hydrogen bonds, well-known for their importance in molecular structural determination through NMR. Via HSQC-TOCSY, we were able to determine the directionality of these hydrogen bonds in sucrose. Furthermore, by means of molecular dynamics simulations in conjunction with NMR, we establish that one out of the three detected hydrogen bonds arises from intermolecular interactions. This finding may shed light on glycan-glycan interactions and glycan recognition by proteins.

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Year:  2013        PMID: 23531151     DOI: 10.1021/jp400402b

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Synthesis and O-Glycosidic Linkage Conformational Analysis of 13C-Labeled Oligosaccharide Fragments of an Antifreeze Glycolipid.

Authors:  Wenhui Zhang; Reagan Meredith; Mi-Kyung Yoon; Xiaocong Wang; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Org Chem       Date:  2019-01-29       Impact factor: 4.354

2.  Conformational properties of l-fucose and the tetrasaccharide building block of the sulfated l-fucan from Lytechinus variegatus.

Authors:  Francisco F Bezerra; William P Vignovich; AyoOluwa O Aderibigbe; Hao Liu; Joshua S Sharp; Robert J Doerksen; Vitor H Pomin
Journal:  J Struct Biol       Date:  2019-11-04       Impact factor: 2.867

3.  Investigation of the Amide Proton Solvent Exchange Properties of Glycosaminoglycan Oligosaccharides.

Authors:  Andrew R Green; Kecheng Li; Blake Lockard; Robert P Young; Leonard J Mueller; Cynthia K Larive
Journal:  J Phys Chem B       Date:  2019-05-22       Impact factor: 2.991

4.  Methods for Measuring Exchangeable Protons in Glycosaminoglycans.

Authors:  Consuelo N Beecher; Cynthia K Larive
Journal:  Methods Mol Biol       Date:  2022

5.  NMR structure analysis of uniformly 13C-labeled carbohydrates.

Authors:  Carolina Fontana; Helena Kovacs; Göran Widmalm
Journal:  J Biomol NMR       Date:  2014-04-26       Impact factor: 2.835

6.  Synthesis and Physicochemical Characterization of D-Tagatose-1-Phosphate: The Substrate of the Tagatose-1-Phosphate Kinase in the Phosphotransferase System-Mediated D-Tagatose Catabolic Pathway of Bacillus licheniformis.

Authors:  Edwige Van der Heiden; Michaël Delmarcelle; Patricia Simon; Melody Counson; Moreno Galleni; Darón I Freedberg; John Thompson; Bernard Joris; Marcos D Battistel
Journal:  J Mol Microbiol Biotechnol       Date:  2015-07-09

7.  Direct NOE simulation from long MD trajectories.

Authors:  G Chalmers; J N Glushka; B L Foley; R J Woods; J H Prestegard
Journal:  J Magn Reson       Date:  2016-01-21       Impact factor: 2.229

8.  The Incorporation of Labile Protons into Multidimensional NMR Analyses: Glycan Structures Revisited.

Authors:  Mihajlo Novakovic; Marcos D Battistel; Hugo F Azurmendi; Maria-Grazia Concilio; Darón I Freedberg; Lucio Frydman
Journal:  J Am Chem Soc       Date:  2021-06-04       Impact factor: 15.419

Review 9.  Novel NMR Avenues to Explore the Conformation and Interactions of Glycans.

Authors:  Pablo Valverde; Jon I Quintana; Jose I Santos; Ana Ardá; Jesús Jiménez-Barbero
Journal:  ACS Omega       Date:  2019-08-19
  9 in total

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