Literature DB >> 23529114

A comparative analysis of soft computing techniques for gene prediction.

Neelam Goel1, Shailendra Singh, Trilok Chand Aseri.   

Abstract

The rapid growth of genomic sequence data for both human and nonhuman species has made analyzing these sequences, especially predicting genes in them, very important and is currently the focus of many research efforts. Beside its scientific interest in the molecular biology and genomics community, gene prediction is of considerable importance in human health and medicine. A variety of gene prediction techniques have been developed for eukaryotes over the past few years. This article reviews and analyzes the application of certain soft computing techniques in gene prediction. First, the problem of gene prediction and its challenges are described. These are followed by different soft computing techniques along with their application to gene prediction. In addition, a comparative analysis of different soft computing techniques for gene prediction is given. Finally some limitations of the current research activities and future research directions are provided.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23529114     DOI: 10.1016/j.ab.2013.03.015

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  8 in total

1.  Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data.

Authors:  Kuang-Lim Chan; Rozana Rosli; Tatiana V Tatarinova; Michael Hogan; Mohd Firdaus-Raih; Eng-Ti Leslie Low
Journal:  BMC Bioinformatics       Date:  2017-01-27       Impact factor: 3.169

2.  Deep Splicer: A CNN Model for Splice Site Prediction in Genetic Sequences.

Authors:  Elisa Fernandez-Castillo; Liliana Ibeth Barbosa-Santillán; Luis Falcon-Morales; Juan Jaime Sánchez-Escobar
Journal:  Genes (Basel)       Date:  2022-05-19       Impact factor: 4.141

3.  Physico-chemical fingerprinting of RNA genes.

Authors:  Ankita Singh; Akhilesh Mishra; Ali Khosravi; Garima Khandelwal; B Jayaram
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

4.  Deciphering the association between gene function and spatial gene-gene interactions in 3D human genome conformation.

Authors:  Renzhi Cao; Jianlin Cheng
Journal:  BMC Genomics       Date:  2015-10-28       Impact factor: 3.969

Review 5.  Well-characterized sequence features of eukaryote genomes and implications for ab initio gene prediction.

Authors:  Ying Huang; Shi-Yi Chen; Feilong Deng
Journal:  Comput Struct Biotechnol J       Date:  2016-07-27       Impact factor: 7.271

6.  Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence.

Authors:  Boas Pucker; Daniela Holtgräwe; Bernd Weisshaar
Journal:  BMC Res Notes       Date:  2017-12-04

7.  PhyloPrimer: a taxon-specific oligonucleotide design platform.

Authors:  Gilda Varliero; Jared Wray; Cédric Malandain; Gary Barker
Journal:  PeerJ       Date:  2021-04-29       Impact factor: 2.984

8.  An optimized approach for annotation of large eukaryotic genomic sequences using genetic algorithm.

Authors:  Biswanath Chowdhury; Arnav Garai; Gautam Garai
Journal:  BMC Bioinformatics       Date:  2017-10-24       Impact factor: 3.169

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.