Literature DB >> 23528987

Structural landscape of the proline-rich domain of Sos1 nucleotide exchange factor.

Caleb B McDonald1, Vikas Bhat, Dmitry Kurouski, David C Mikles, Brian J Deegan, Kenneth L Seldeen, Igor K Lednev, Amjad Farooq.   

Abstract

Despite its key role in mediating a plethora of cellular signaling cascades pertinent to health and disease, little is known about the structural landscape of the proline-rich (PR) domain of Sos1 guanine nucleotide exchange factor. Herein, using a battery of biophysical tools, we provide evidence that the PR domain of Sos1 is structurally disordered and adopts an extended random coil-like conformation in solution. Of particular interest is the observation that while chemical denaturation of PR domain results in the formation of a significant amount of polyproline II (PPII) helices, it has little or negligible effect on its overall size as measured by its hydrodynamic radius. Our data also show that the PR domain displays a highly dynamic conformational basin in agreement with the knowledge that the intrinsically unstructured proteins rapidly interconvert between an ensemble of conformations. Collectively, our study provides new insights into the conformational equilibrium of a key signaling molecule with important consequences on its physiological function.
Copyright © 2013 Elsevier B.V. All rights reserved.

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Year:  2013        PMID: 23528987      PMCID: PMC3615079          DOI: 10.1016/j.bpc.2013.02.008

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  75 in total

1.  Random-coil behavior and the dimensions of chemically unfolded proteins.

Authors:  Jonathan E Kohn; Ian S Millett; Jaby Jacob; Bojan Zagrovic; Thomas M Dillon; Nikolina Cingel; Robin S Dothager; Soenke Seifert; P Thiyagarajan; Tobin R Sosnick; M Zahid Hasan; Vijay S Pande; Ingo Ruczinski; Sebastian Doniach; Kevin W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

2.  Intrinsic protein disorder and protein-protein interactions.

Authors:  Wei-Lun Hsu; Christopher Oldfield; Jingwei Meng; Fei Huang; Bin Xue; Vladimir N Uversky; Pedro Romero; A Keith Dunker
Journal:  Pac Symp Biocomput       Date:  2012

3.  Unusual compactness of a polyproline type II structure.

Authors:  Bojan Zagrovic; Jan Lipfert; Eric J Sorin; Ian S Millett; Wilfred F van Gunsteren; Sebastian Doniach; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-05       Impact factor: 11.205

4.  Circular dichroism spectrum of peptides in the poly(Pro)II conformation.

Authors:  Robert W Woody
Journal:  J Am Chem Soc       Date:  2009-06-17       Impact factor: 15.419

Review 5.  Mitogen-activated protein kinase pathways.

Authors:  M J Robinson; M H Cobb
Journal:  Curr Opin Cell Biol       Date:  1997-04       Impact factor: 8.382

6.  Multivalent binding and facilitated diffusion account for the formation of the Grb2-Sos1 signaling complex in a cooperative manner.

Authors:  Caleb B McDonald; Jordan E Balke; Vikas Bhat; David C Mikles; Brian J Deegan; Kenneth L Seldeen; Amjad Farooq
Journal:  Biochemistry       Date:  2012-03-02       Impact factor: 3.162

Review 7.  Role of solvation effects in protein denaturation: from thermodynamics to single molecules and back.

Authors:  Jeremy L England; Gilad Haran
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

8.  Biomolecular solution X-ray scattering at the National Synchrotron Light Source.

Authors:  Marc Allaire; Lin Yang
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

9.  CD of proline-rich polypeptides: application to the study of the repetitive domain of maize glutelin-2.

Authors:  F Rabanal; M D Ludevid; M Pons; E Giralt
Journal:  Biopolymers       Date:  1993-07       Impact factor: 2.505

10.  Improved side-chain torsion potentials for the Amber ff99SB protein force field.

Authors:  Kresten Lindorff-Larsen; Stefano Piana; Kim Palmo; Paul Maragakis; John L Klepeis; Ron O Dror; David E Shaw
Journal:  Proteins       Date:  2010-06
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  4 in total

1.  SOS1 Gain-of-Function Variants in Dilated Cardiomyopathy.

Authors:  Jason R Cowan; Lorien Salyer; Nathan T Wright; Daniel D Kinnamon; Pedro Amaya; Elizabeth Jordan; Michael J Bamshad; Deborah A Nickerson; Ray E Hershberger
Journal:  Circ Genom Precis Med       Date:  2020-06-30

2.  Allosteric regulation of GRB2 modulates RAS activation.

Authors:  Neda S Kazemein Jasemi; Mohammad R Ahmadian
Journal:  Small GTPases       Date:  2022-01

3.  Mechanism of SOS PR-domain autoinhibition revealed by single-molecule assays on native protein from lysate.

Authors:  Young Kwang Lee; Shalini T Low-Nam; Jean K Chung; Scott D Hansen; Hiu Yue Monatrice Lam; Steven Alvarez; Jay T Groves
Journal:  Nat Commun       Date:  2017-04-28       Impact factor: 14.919

Review 4.  Digested disorder: Quarterly intrinsic disorder digest (April-May-June, 2013).

Authors:  Shelly DeForte; Krishna D Reddy; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2013-01-01
  4 in total

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