Literature DB >> 23523050

Functional impact of the human mobilome.

Timothy D Babatz1, Kathleen H Burns.   

Abstract

The human genome is replete with interspersed repetitive sequences derived from the propagation of mobile DNA elements. Three families of human retrotransposons remain active today: LINE1, Alu, and SVA elements. Since 1988, de novo insertions at previously recognized disease loci have been shown to generate highly penetrant alleles in Mendelian disorders. Only recently has the extent of germline-transmitted retrotransposon insertion polymorphism (RIP) in human populations been fully realized. Also exciting are recent studies of somatic retrotransposition in human tissues and reports of tumor-specific insertions, suggesting roles in tissue heterogeneity and tumorigenesis. Here we discuss mobile elements in human disease with an emphasis on exciting developments from the last several years.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23523050      PMCID: PMC3703464          DOI: 10.1016/j.gde.2013.02.007

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  40 in total

1.  Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes.

Authors:  M Speek
Journal:  Mol Cell Biol       Date:  2001-03       Impact factor: 4.272

2.  The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons.

Authors:  Galit Lev-Maor; Rotem Sorek; Noam Shomron; Gil Ast
Journal:  Science       Date:  2003-05-23       Impact factor: 47.728

3.  Reverse transcriptase encoded by a human transposable element.

Authors:  S L Mathias; A F Scott; H H Kazazian; J D Boeke; A Gabriel
Journal:  Science       Date:  1991-12-20       Impact factor: 47.728

4.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

5.  Human L1 element target-primed reverse transcription in vitro.

Authors:  Gregory J Cost; Qinghua Feng; Alain Jacquier; Jef D Boeke
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

6.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

7.  An ancient retrotransposal insertion causes Fukuyama-type congenital muscular dystrophy.

Authors:  K Kobayashi; Y Nakahori; M Miyake; K Matsumura; E Kondo-Iida; Y Nomura; M Segawa; M Yoshioka; K Saito; M Osawa; K Hamano; Y Sakakihara; I Nonaka; Y Nakagome; I Kanazawa; Y Nakamura; K Tokunaga; T Toda
Journal:  Nature       Date:  1998-07-23       Impact factor: 49.962

8.  Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA.

Authors:  H Hohjoh; M F Singer
Journal:  EMBO J       Date:  1996-02-01       Impact factor: 11.598

9.  Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes.

Authors:  Jeffrey S Han; Suzanne T Szak; Jef D Boeke
Journal:  Nature       Date:  2004-05-20       Impact factor: 49.962

10.  Extensive somatic L1 retrotransposition in colorectal tumors.

Authors:  Szilvia Solyom; Adam D Ewing; Eric P Rahrmann; Tara Doucet; Heather H Nelson; Michael B Burns; Reuben S Harris; David F Sigmon; Alex Casella; Bracha Erlanger; Sarah Wheelan; Kyle R Upton; Ruchi Shukla; Geoffrey J Faulkner; David A Largaespada; Haig H Kazazian
Journal:  Genome Res       Date:  2012-09-11       Impact factor: 9.043

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  14 in total

1.  Repetitive elements regulate circular RNA biogenesis.

Authors:  Jeremy E Wilusz
Journal:  Mob Genet Elements       Date:  2015-05-21

2.  Target capture during Mos1 transposition.

Authors:  Aude Pflieger; Jerôme Jaillet; Agnès Petit; Corinne Augé-Gouillou; Sylvaine Renault
Journal:  J Biol Chem       Date:  2013-11-22       Impact factor: 5.157

3.  Characterizing the functions of Ty1 Gag and the Gag-derived restriction factor p22/p18.

Authors:  Katarzyna Pachulska-Wieczorek; Leszek Błaszczyk; Julita Gumna; Yuri Nishida; Agniva Saha; Marcin Biesiada; David J Garfinkel; Katarzyna J Purzycka
Journal:  Mob Genet Elements       Date:  2016-03-07

4.  Guanine quadruplexes are formed by specific regions of human transposable elements.

Authors:  Matej Lexa; Pavlina Steflova; Tomas Martinek; Michaela Vorlickova; Boris Vyskot; Eduard Kejnovsky
Journal:  BMC Genomics       Date:  2014-11-27       Impact factor: 3.969

5.  Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites.

Authors:  Fiorella C Grandi; James M Rosser; Simon J Newkirk; Jun Yin; Xiaoling Jiang; Zhuo Xing; Leanne Whitmore; Sanum Bashir; Zoltán Ivics; Zsuzsanna Izsvák; Ping Ye; Y Eugene Yu; Wenfeng An
Journal:  Genome Res       Date:  2015-05-20       Impact factor: 9.043

6.  The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements.

Authors:  Elena M Pugacheva; Evgeny Teplyakov; Qiongfang Wu; Jingjing Li; Cheng Chen; Chengcheng Meng; Jian Liu; Susan Robinson; Dmitry Loukinov; Abdelhalim Boukaba; Andrew Paul Hutchins; Victor Lobanenkov; Alexander Strunnikov
Journal:  Epigenetics Chromatin       Date:  2016-08-31       Impact factor: 4.954

7.  Deciphering fact from artifact when using reporter assays to investigate the roles of host factors on L1 retrotransposition.

Authors:  Pamela R Cook; G Travis Tabor
Journal:  Mob DNA       Date:  2016-11-22

8.  Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues.

Authors:  Marco De Cecco; Steven W Criscione; Abigail L Peterson; Nicola Neretti; John M Sedivy; Jill A Kreiling
Journal:  Aging (Albany NY)       Date:  2013-12       Impact factor: 5.682

9.  Conservative site-specific and single-copy transgenesis in human LINE-1 elements.

Authors:  Shree Harsha Vijaya Chandra; Harshyaa Makhija; Sabrina Peter; Cho Mar Myint Wai; Jinming Li; Jindong Zhu; Zhonglu Ren; Martina Stagno D'Alcontres; Jia Wei Siau; Sharon Chee; Farid John Ghadessy; Peter Dröge
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

Review 10.  LINE-1 in cancer: multifaceted functions and potential clinical implications.

Authors:  Lu Xiao-Jie; Xue Hui-Ying; Xiaolong Qi; Xu Jiang; Ma Shi-Jie
Journal:  Genet Med       Date:  2015-09-03       Impact factor: 8.822

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