Literature DB >> 23521209

Complete mitochondrial genome of the Tristram's Bunting, Emberiza tristrami (Aves: Passeriformes): the first representative of the family Emberizidae with six boxes in the central conserved domain II of control region.

Xianzhao Kan1, Jian Yuan, Liqin Zhang, Xifeng Li, Lei Yu, Lei Chen, Zhichun Guo, Jianke Yang.   

Abstract

Mitochondrial genome has proven to be a powerful tool for phylogenetic inference, phylogeography, and molecular evolution. In this study, we determined the complete mitochondrial genome of Emberiza tristrami (Passeriformes: Emberizidae) for use in future phylogenetic analyses. This circular mitochondrial genome is 16,789 bp in length and composed of 13 typical protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 putative control region (CR). One extra nucleotide "C" of nad3 is not detected in the mitogenome of E. tristrami. The CR of E. tristrami can be divided into three domains: ETAS (extended termination-associated sequence) domain I (nt 1-431), central conserved domain II (nt 432-847), and CSB (conserved sequence block) domain III (nt 848-1217). Six conserved sequence boxes in the central conserved domain II were identified as boxes F, E, D, C, b, and B.

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Year:  2013        PMID: 23521209     DOI: 10.3109/19401736.2013.772165

Source DB:  PubMed          Journal:  Mitochondrial DNA        ISSN: 1940-1736


  4 in total

1.  The complete mitochondrial genome of the yellow-browed bunting, Emberiza chrysophrys (Passeriformes: Emberizidae), and phylogenetic relationships within the genus Emberiza.

Authors:  Qiongqiong Ren; Jian Yuan; Liqian Ren; Liqin Zhang; Lei Zhang; Lan Jiang; Dongsheng Chen; Xianzhao Kan; Baowei Zhang
Journal:  J Genet       Date:  2014-12       Impact factor: 1.166

2.  Sequencing and phylogenetic analysis of the Pyrgilauda ruficollis (Aves, Passeridae) complete mitochondrial genome.

Authors:  Yong-Gui Ma; Yuan Huang; Fu-Min Lei
Journal:  Dongwuxue Yanjiu       Date:  2014-03

3.  The Mitochondrial Genomes of Aquila fasciata and Buteo lagopus (Aves, Accipitriformes): Sequence, Structure and Phylogenetic Analyses.

Authors:  Lan Jiang; Juan Chen; Ping Wang; Qiongqiong Ren; Jian Yuan; Chaoju Qian; Xinghong Hua; Zhichun Guo; Lei Zhang; Jianke Yang; Ying Wang; Qin Zhang; Hengwu Ding; De Bi; Zongmeng Zhang; Qingqing Wang; Dongsheng Chen; Xianzhao Kan
Journal:  PLoS One       Date:  2015-08-21       Impact factor: 3.240

4.  Complete mitochondrial genome sequence of Emberiza sulphurata (Emberizidae: Emberiza).

Authors:  Mu-Yeong Lee; Hey Sook Jeon; Junghwa An
Journal:  Mitochondrial DNA B Resour       Date:  2017-02-16       Impact factor: 0.658

  4 in total

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