| Literature DB >> 23520481 |
Eva Veronesi1, Mark Henstock, Simon Gubbins, Carrie Batten, Robyn Manley, James Barber, Bernd Hoffmann, Martin Beer, Houssam Attoui, Peter Paul Clement Mertens, Simon Carpenter.
Abstract
BACKGROUND: The recent unprecedented emergence of arboviruses transmitted by Culicoides biting midges in northern Europe has necessitated the development of techniques to differentiate competent vector species. At present these techniques are entirely reliant upon interpretation of semi-quantitative RT-PCR (sqPCR) data in the form of Cq values used to infer the presence of viral RNA in samples. METHODOLOGY/PRINCIPALEntities:
Mesh:
Year: 2013 PMID: 23520481 PMCID: PMC3592918 DOI: 10.1371/journal.pone.0057747
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Differences in Cq values between the dissected body parts and saliva for C. sonorensis infected by intrathoracic inoculation with SBV.
| Parameter | Estimate | 95% confidence interval |
| intercept | 20.25 | (18.46–22.04) |
| body part | ||
| abdomen/thorax | baseline | – |
| head | 4.64 | (3.89–5.38) |
| saliva | 12.79 | (11.96–13.62) |
| standard deviation of random effect | 2.76 |
coefficients in the linear mixed model for Cq values.
Figure 1Observed Cq values for Schmallenberg virus (SBV) in Culicoides biting midges infected via different routes and processed ten days post infection.
(A) C. sonorensis infected via intrathoracic inoculation, incubated for ten days after which the abdomen/thorax, head and saliva of individual insects were processed separately using sqPCR. The box-and-whisker plot shows the median (horizontal line), interquartile range (box), 1.5 times the interquartile range (whiskers) and any outliers (crosses). (B) C. sonorensis fed orally on SBV-infected blood via a membrane-based system and processed separately as whole insects using sqPCR (C) C. nubeculosus fed orally on SBV-infected blood via a membrane-based system and processed separately as whole insects using sqPCR.
Estimates for vector competence and the mean and standard deviation for Cq values in Culicoides biting midges with transmissible and sub-transmissible infections after feeding on SBV-infected blood via a membrane.
| Parameter | mean | median | 95% credible interval |
|
| |||
| probability of developing a transmissible infection (φ) | 0.19 | 0.19 | (0.14–0.23) |
| mean Cq value | |||
| transmissible infection (µ1) | 21.05 | 21.05 | (20.28–21.83) |
| sub-transmissible infection (µ0) | 35.72 | 35.73 | (35.14–36.28) |
| standard deviation of Cq value | |||
| transmissible infection (σ1) | 2.70 | 2.69 | (2.13–3.22) |
| sub-transmissible infection (σ0) | 2.96 | 2.94 | (2.56–3.46) |
| Probability of no Cq value in a sub-transmissible infection ( | 0.53 | 0.53 | (0.47–0.60) |
|
| |||
| probability of developing a transmissible infection (φ) | 0.07 | 0.07 | (7.5×10−4–0.15) |
| mean Cq value | |||
| transmissible infection (µ1) | 24.53 | 24.54 | (23.34–25.78) |
| sub-transmissible infection (µ0) | 34.48 | 34.94 | (31.51–36.53) |
| standard deviation of Cq value | |||
| transmissible infection (σ1) | 1.62 | 1.93 | (0.03–3.41) |
| sub-transmissible infection (σ0) | 4.02 | 3.47 | (2.27–6.49) |
| probability of no Cq value in a sub-transmissible infection ( | 0.71 | 0.71 | (0.61–0.79) |
summary statistics for the marginal posterior distributions (see Figure S1);
the posterior distribution for C. nubeculosus is bimodal (Figure S1) and the summary statistics must be treated with caution.
Figure 2Inferred probability that Culicoides with a given Cq value has a transmissible infection (derived using )).
Solid lines are the posterior median and the dashed lines indicate the 95% credible interval for (A) C. sonorensis and (B) C. nubeculosus.