Literature DB >> 23519815

Preliminary X-ray diffraction analysis of octaprenyl pyrophosphate synthase from Escherichia coli.

Xin Li1, Xu Han, Tzu-Ping Ko, Chun-Chi Chen, Zhen Zhu, Erbing Hua, Rey-Ting Guo, Chun-Hsiang Huang.   

Abstract

Octaprenyl pyrophosphate synthase (OPPs), which belongs to the E-type prenyltransferase family, catalyses the successive condensation of farnesyl pyrophosphate with five isopentenyl pyrophosphate molecules to form trans-C40-octaprenyl pyrophosphate (OPP). OPP is essential for the biosynthesis of bacterial ubiquinone or menaquinone side chains, which play an important role in the electron-transport system. Here, Escherichia coli OPPs was expressed, purified and crystallized. The crystals, which belonged to the orthorhombic space group P2₁2₁2, with unit-cell parameters a=117.0, b=128.4, c=46.4 Å, were obtained by the sitting-drop vapour-diffusion method and diffracted to 2.2 Å resolution. Initial phase determination by molecular replacement (MR) clearly indicated that the crystal contained one homodimer per asymmetric unit. Further model building and structural refinement are in progress.

Entities:  

Keywords:  Escherichia coli; octaprenyl pyrophosphate; octaprenyl pyrophosphate synthase; prenyltransferase

Mesh:

Substances:

Year:  2013        PMID: 23519815      PMCID: PMC3606585          DOI: 10.1107/S1744309113003837

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

Review 1.  Microbial ubiquinones: multiple roles in respiration, gene regulation and oxidative stress management.

Authors:  Britta Søballe; Robert K Poole
Journal:  Microbiology       Date:  1999-08       Impact factor: 2.777

2.  Enzymatic Aspects of Isoprenoid Chain Elongation.

Authors:  Kyozo Ogura; Tanetoshi Koyama
Journal:  Chem Rev       Date:  1998-06-18       Impact factor: 60.622

3.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 6.  Terpene biosynthesis: modularity rules.

Authors:  Eric Oldfield; Fu-Yang Lin
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-21       Impact factor: 15.336

Review 7.  Chain elongation in the isoprenoid biosynthetic pathway.

Authors:  B A Kellogg; C D Poulter
Journal:  Curr Opin Chem Biol       Date:  1997-12       Impact factor: 8.822

8.  Preliminary X-ray diffraction analysis of octaprenyl pyrophosphate synthase crystals from Thermotoga maritima and Escherichia coli.

Authors:  Rey-Ting Guo; Tzu-Ping Ko; Chia-Cheng Chou; Hui-Lin Shr; Hsing-Mao Chu; Yao-Hsien Tsai; Po-Huang Liang; Andrew H J Wang
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-11-27

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  2 in total

1.  Discovery of Lipophilic Bisphosphonates That Target Bacterial Cell Wall and Quinone Biosynthesis.

Authors:  Satish R Malwal; Lu Chen; Hunter Hicks; Fiona Qu; Weidong Liu; Alli Shillo; Wen Xuan Law; Jianan Zhang; Neal Chandnani; Xu Han; Yingying Zheng; Chun-Chi Chen; Rey-Ting Guo; Ahmed AbdelKhalek; Mohamed N Seleem; Eric Oldfield
Journal:  J Med Chem       Date:  2019-02-21       Impact factor: 7.446

2.  Crystal structures of ligand-bound octaprenyl pyrophosphate synthase from Escherichia coli reveal the catalytic and chain-length determining mechanisms.

Authors:  Xu Han; Chun-Chi Chen; Chih-Jung Kuo; Chun-Hsiang Huang; Yingying Zheng; Tzu-Ping Ko; Zhen Zhu; Xinxin Feng; Ke Wang; Eric Oldfield; Andrew H-J Wang; Po-Huang Liang; Rey-Ting Guo; Yanhe Ma
Journal:  Proteins       Date:  2014-11-18
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.