Literature DB >> 23519813

Heterologous expression, purification, crystallization and preliminary X-ray analysis of Trichoderma reesei xylanase II and four variants.

Qun Wan1, Andrey Kovalevsky, Qiu Zhang, Scott Hamilton-Brehm, Rosalynd Upton, Kevin L Weiss, Marat Mustyakimov, David Graham, Leighton Coates, Paul Langan.   

Abstract

Xylanase II from Trichoderma reesei catalyzes the hydrolysis of glycosidic bonds in xylan. Crystallographic studies of this commercially important enzyme have been initiated to investigate its reaction mechanism, substrate binding and dependence on basic pH conditions. The wild-type protein was heterologously expressed in an Escherichia coli host using the defined medium and four active-site amino acids were replaced to abolish its activity (E177Q and E86Q) or to change its pH optimum (N44D and N44H). Cation-exchange and size-exclusion chromatography were used to obtain >90% protein purity. The ligand-free proteins and variant complexes containing substrate (xylohexaose) or product (xylotriose) were crystallized in several different space groups and diffracted to high resolutions (from 1.07 to 1.55 Å).

Entities:  

Keywords:  Trichoderma reesei; xylanase II

Mesh:

Substances:

Year:  2013        PMID: 23519813      PMCID: PMC3606583          DOI: 10.1107/S1744309113001164

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  Substrate dependency and effect of xylanase supplementation on enzymatic hydrolysis of ammonia-treated biomass.

Authors:  Rajesh Gupta; Tae Hyun Kim; Yoon Y Lee
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Review 2.  The Escherichia coli proteome: past, present, and future prospects.

Authors:  Mee-Jung Han; Sang Yup Lee
Journal:  Microbiol Mol Biol Rev       Date:  2006-06       Impact factor: 11.056

3.  Covalent binding of three epoxyalkyl xylosides to the active site of endo-1,4-xylanase II from Trichoderma reesei.

Authors:  R Havukainen; A Törrönen; T Laitinen; J Rouvinen
Journal:  Biochemistry       Date:  1996-07-23       Impact factor: 3.162

Review 4.  Xylanases from fungi: properties and industrial applications.

Authors:  M L T M Polizeli; A C S Rizzatti; R Monti; H F Terenzi; J A Jorge; D S Amorim
Journal:  Appl Microbiol Biotechnol       Date:  2005-01-27       Impact factor: 4.813

5.  Preliminary joint X-ray and neutron protein crystallographic studies of endoxylanase II from the fungus Trichoderma longibrachiatum.

Authors:  Andrey Y Kovalevsky; B Leif Hanson; Sean Seaver; S Zoë Fisher; Marat Mustyakimov; Paul Langan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-01-27

6.  The two major xylanases from Trichoderma reesei: characterization of both enzymes and genes.

Authors:  A Törrönen; R L Mach; R Messner; R Gonzalez; N Kalkkinen; A Harkki; C P Kubicek
Journal:  Biotechnology (N Y)       Date:  1992-11

7.  An approach to the production of soluble protein from a fungal gene encoding an aggregation-prone xylanase in Escherichia coli.

Authors:  Yilin Le; Jingjing Peng; Huawei Wu; Jianzhong Sun; Weilan Shao
Journal:  PLoS One       Date:  2011-04-08       Impact factor: 3.240

8.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  Three-dimensional structure of endo-1,4-beta-xylanase II from Trichoderma reesei: two conformational states in the active site.

Authors:  A Törrönen; A Harkki; J Rouvinen
Journal:  EMBO J       Date:  1994-06-01       Impact factor: 11.598

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  1 in total

1.  Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.

Authors:  Qun Wan; Jerry M Parks; B Leif Hanson; Suzanne Zoe Fisher; Andreas Ostermann; Tobias E Schrader; David E Graham; Leighton Coates; Paul Langan; Andrey Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

  1 in total

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