| Literature DB >> 23516499 |
Joseph W Kloepper1, John A McInroy, Ke Liu, Chia-Hui Hu.
Abstract
BACKGROUND: Fern Distortion Syndrome (FDS) is a serious disease of Leatherleaf fern (Rumohra adiantiformis). The main symptom of FDS is distortion of fronds, making them unmarketable. Additional symptoms include stunting, irregular sporulation, decreased rhizome diameter, and internal discoloration of rhizomes. We previously reported an association of symptoms with increased endophytic rhizome populations of fluorescent pseudomonads (FPs). The aim of the current study was to determine if FPs from ferns in Costa Rica with typical FDS symptoms would recreate symptoms of FDS. METHODOLOGY ANDEntities:
Mesh:
Substances:
Year: 2013 PMID: 23516499 PMCID: PMC3596302 DOI: 10.1371/journal.pone.0058531
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Identification and characterization of fluorescent pseudomonads used to inoculate fern rhizomes to determine development of symptoms of FDS.
| Treatment number in inoculation test | Strain number | Origin | Closest matching type strains | Phylogenetic cluster | HR in tobacco | Rot of potato slice | IAA production (µg/ml) |
| 2A and B | B1 |
|
| C | − | + | 6.53 |
| 2A and B | B2 |
|
| B | − | + | 11.67 |
| 2A and B | B4 |
|
| C | − | + | 26.37 |
| 2A and B | B8 |
|
| A | − | + | 10.46 |
| 2A and B | B9 |
|
| D | − | − | 21.27 |
| 2A and B | B11 |
|
| C | − | − | 17.66 |
| 2A and B | B12 | HRZ-7 |
| C | − | − | 21.71 |
| 2A and B | B13 |
|
| C | − | − | 24.64 |
| 2A and B | B20 |
|
| D | − | − | 21.47 |
| 2A and B | B21 |
|
| C | − | − | 17.85 |
| 2A and B | B24 |
|
| C | − | + | 20.76 |
| 2A and B | B27 |
|
| C | − | − | 18.62 |
| 2A and B | B35 |
|
| C | − | − | 18.82 |
| 2A and B | B38 | HRZ-14 |
| B | − | − | 11.77 |
| 2A and B | B41 |
|
| C | − | + | 20.41 |
| 2A and B | B42 |
|
| B | − | − | 8.45 |
| 2A and B | B45 |
|
| B | − | − | 7.87 |
| 3A and B | CRI5 |
|
| B | + | ++ | 11.14 |
| 3A and B | CRI6 |
|
| D | − | − | 23.06 |
| 3A and B | CRI7 |
|
| A | ++ | + | 13.19 |
| 3A and B | CRI8 |
|
| B | ++ | ++ | 12.35 |
| 3A and B | CRI9 |
|
| B | ++ | + | 12.28 |
| 3A and B | CRI10 |
|
| A | ++ | ++ | 9.76 |
| 3A and B | CRI12B |
|
| B | ++ | ++ | 12.05 |
| 3A and B | CRI26 | SRZ-8 |
| B | + | ++ | 8.26 |
| 3A and B | CRI27 | SRZ-9 |
| B | + | + | 11.56 |
| 3A and B | CRI28 | SRZ-10 |
| B | + | + | 10.66 |
| 3A and B | CRI29 | SRZ-11 |
| A | + | ++ | 7.71 |
| 4A and B | CRI13 | SRZ-12 |
| B | + | ++ | 10.27 |
| 4A and B | CRI14 | SRZ-13 |
| A | + | − | 7.78 |
| 4A and B | CRI15 | SRZ-14 |
| B | − | ++ | 7.43 |
| 4A and B | CRI16 | SRZ-15 |
| A | − | ++ | 8.14 |
| 4A and B | CRI17 | SRZ-16 |
| A | − | ++ | 9.05 |
| 5A and B | CRI62 | SRS-1 |
| B | + | + | 7.68 |
| 5A and B | CRI63 | SRS-2 |
| B | + | ++ | 9.91 |
| 5A and B | CRI64 | SRS-3 |
| A | + | ++ | 6.02 |
| 5A and B | CRI65 | SRS-4 |
| B | + | ++ | 8.39 |
| 5A and B | CRI66c | SRS-5 |
| A | + | ++ | 6.46 |
| 5A and B | CRI67 | SRS-6 |
| B | + | − | 11.50 |
| 5A and B | CRI68 | SRS-7 |
| B | − | + | 10.80 |
| 5A and B | CRI69 | SRS-8 |
| A | − | + | 8.00 |
| 5A and B | CRI70 | SRS-9 |
| B | − | + | 9.66 |
| 5A and B | CRI71 | SRS-10 |
| A | + | + | 9.10 |
| 5A and B | CRI72b |
|
| E | + | + | 7.79 |
| 5A and B | CRI73 | SRS-12 |
| A | + | + | 7.40 |
| 5A and B | CRI74 | SRS-13 |
| D | + | − | 16.67 |
| 5A and B | CRI75a | SRS-14 |
| E | + | − | 7.79 |
HRZ = Inside rhizomes of healthy-appearing ferns from a fernery in Florida without history of Benlate use; SRS = Rhizosphere (roots and rhizomes) of symptomatic ferns in Costa Rica; SRZ = inside rhizomes of symptomatic ferns in Costa Rica. Bold indicates isolates that have unique 16S rRNA gene sequences.
Identified using phylogenetic analysis of 16S rRNA gene sequencing. Numbers in parentheses indicate the “seqmatch score”. These are the number of unique 7-base oligomers shared between each strain sequence and the indicated RDP sequence divided by the lowest number of unique oligos in either of the two sequences.
The phylogenetic clusters are shown in Figure 1.
Tobacco hypersensitive test; ++ indicates dry necrosis in 24–36 hr after inoculation; + indicates wet necrosis in 48 hr.
Measurement of pectinolytic activity, where ++ indicates soft rot of potato slice 24 hr after inoculation; + indicates soft rot 48 hr after inoculation.
Production of IAA was quantified as described in the methods.
Summary of the inoculated fluorescent pseudomonads in each treatment group belonging to each phylogenetic cluster shown in Figure 1.
| Treatment | ||||||
| Phylogenetic Clusters | HRZ (treatment 2) | SRZ (treatment 3) | SRZ (treatment 4) | SRS (treatment 5) | No. of Isolates | Closest matches of type strain(s) (with highest SeqMatch score) |
|
| 1 | 3 | 3 | 5 | 12 |
|
|
| 4 | 7 | 2 | 6 | 19 |
|
|
| 10 | 0 | 0 | 0 | 10 |
|
|
| 2 | 1 | 0 | 1 | 4 |
|
|
| 0 | 0 | 0 | 2 | 2 |
|
Taxa of fluorescent pseudomonads in the Ribosomal Database Project II with 16S rRNA gene sequences most similar to those isolates in each cluster.
Figure 1Neighbor-joining (NJ) bootstrap consensus tree of partial 16S rRNA gene (1412 bp).
This Figure illustrates the phylogenetic relationship among fluorescent Pseudomonas spp. used to inoculate fern rhizomes. Strain codes are listed in legend of Table 1. The analyses were done with MEGA version 5 [6], and the numbers at each node represent bootstrap value (1000 replicates). Scale bar: substitutions/site.
Symptoms of Fern Distortion Syndrome 12 months after inoculation of fern rhizomes with fluorescent pseudomonads isolated from symptomatic and asymptomatic leatherleaf fern.
| Treatment number | Source of bacteria and concentration | Mean FDS severity rating | Mean height (cm) of plants | Mean width (cm) of largest frond per plant | Mean no. of largest 5 fronds with twisted rachis | Mean no. of largest 5 fronds with pyramidal shape | No. of plants with dwarfing | Mean no. of largest 5 fronds with pinnae twisted out of the plane of the frond | No. of plants with crispy, thickened fronds |
| 1 | No bacteria | 0.38 C | 28.1 A | 8.5 B | 0.25 D | 4.63 A | 0 | 0.25 C | 0 |
| 2A | HRZ log 6.0 | 0.25C C | 28.9 A | 9.6 A | 0.38 D | 4.75 A | 0 | 0.13 C | 0 |
| 2B | HRZ log 8.0 | 0.38 C | 28.5 A | 9.6 A | 0.63 D | 4.50 A | 0 | 0.25 C | 0 |
| 3A | SRZ log 6.0 | 2.38 AB | 20.1 B | 6.6 C | 4.75 A | 0.38 C | 6 | 3.25 AB | 2 |
| 3B | SRZ log 8.0 | 2.63 A | 16.5 B | 5.0 D | 4.75 A | 0.13 C | 6 | 4.00 A | 3 |
| 4A | SRZ log 6.0 | 2.25 AB | 21.3 B | 5.5 D | 4.00 AB | 0.63 C | 4 | 3.38 AB | 2 |
| 4B | SRZ log 8.0 | 2.38 AB | 17.6 C | 5.0 D | 3.88 B | 0.63 C | 6 | 3.25 A | 2 |
| 5A | SRS log 6.0 | 1.75 B | 22.2 B | 5.7 CD | 2.88 C | 1.75 B | 2 | 2.25 B | 3 |
| 5B | SRS log 8.0 | 2.00 AB | 19.5 BC | 5.1 D | 3.13 BC | 1.25 BC | 2 | 2.50 B | 2 |
| LSD 0.01 | 0.71 | 2.7 | 1.0 | 0.76 | 0.80 | NA | 0.89 | NA |
Strains of fluorescent pseudomonads used in each treatment are shown in Table 1.
HRZ = Inside rhizomes of healthy-appearing ferns from a fernery in Florida without history of Benlate use; SRS = Rhizosphere (roots and rhizomes) of symptomatic ferns in Costa Rica; SRZ = inside rhizomes of symptomatic ferns in Costa Rica.
Using the 0 to 3 rating scale described by Kloepper et al. [1].
Mean of 8 replicate plants per treatment. Means followed by different letters are significantly different at P = 0.01.
Figure 2Recreation of FDS symptoms of frond deformities by inoculation with fluorescent pseudomonads from diseased plants.
Examples of distortions evident at 12 months after inoculation. A = water control (treatment 1), B = bacteria from inside rhizomes of healthy ferns (treatment 2B), C–F = bacteria from inside rhizomes of ferns with FDS symptoms (treatments 3A, 3B, 4A, and 4B), G–H = rhizosphere bacteria from ferns with FDS symptoms (treatments 5A and 5B).
Figure 3Recreation of FDS symptoms of irregular sporulation.
Inoculation with fluorescent pseudomonads from rhizomes of diseased plants. Each image is of a different plant showing asymmetrical pattern of sporulation on lower side of fronds.
Figure 4Recreation of FDS symptoms of vena roja.
Inoculation with fluorescent pseudomonads from rhizomes of diseased plants. Each image is of a different plant showing reddish streaking of pinnae.
Figure 5Recreation of FDS symptoms of reduced rhizome diameter.
Inoculation with fluorescent pseudomonads from rhizomes and the rhizosphere of diseased plants. Representative examples of rhizomes on ferns 17 months after inoculation. A, B = bacteria from inside rhizomes of ferns with FDS symptoms (treatments 3A and 4A), C = rhizosphere bacteria from ferns with FDS symptoms (treatment 5A), D = bacteria from inside rhizomes of healthy ferns (treatment 2B), E = water control.
Figure 6Recreation of FDS symptoms of internal discoloration of rhizomes.
Inoculation with fluorescent pseudomonads from rhizomes and the rhizosphere of diseased plants. A, B = bacteria from inside rhizomes of healthy ferns (treatments 2A and 2B), C = water control, D, E = bacteria from inside rhizomes of ferns with FDS symptoms (treatments 3A and 4A), F = rhizosphere bacteria from ferns with FDS symptoms (treatment 5A).
Plant growth parameters and internal rhizome populations 17 months after inoculation with fluorescent pseudomonads.
| Treatment number | Source of bacteria and concentration | Total plant fresh wt. (g) | No. of rhizomes per plant | Caliper of three rhizomes per plant (mm) | Root dry wt. (g) | Shoot dry wt. (g) | Endophytic population of fluorescent pseudomonads inside rhizomes (Log cfu/g ) |
| 1 | No bacteria | 936 a | 11.5 ab | 7.28 ab | 122.8 a | 52.8 a | 1.36 c |
| 2A | HRZ log 6.0 | 1101 a | 13.4 a | 7.90 a | 146.8 a | 54.6 a | 1.34 c |
| 2B | HRZ log 8.0 | 880 a | 9.9 b | 6.95 b | 120.4 a | 48.4 a | 1.77 c |
| 3A | SRZ log 6.0 | 368 b | 5.4 c | 5.73 c | 50.0 b | 14.2 b | 2.87 b |
| 3B | SRZ log 8.0 | 280 b | 5.0 c | 5.51 c | 29.2 b | 11.6 b | 2.95 b |
| 4A | SRZ log 6.0 | 371 b | 5.4 c | 5.69 c | 40.6b | 15.2 b | 3.26 ab |
| 4B | SRZ log 8.0 | 275 b | 5.5 c | 5.33 c | 35.2 b | 11.6 b | 3.91 ab |
| 5A | SRS log 6.0 | 353 b | 5.0 c | 5.47 c | 38.6 b | 16,0 b | 3.89 ab |
| 5B | SRS log 8.0 | 290 b | 5.6 c | 5.15 c | 28.8 b | 10.8 b | 4.10 a |
| LSD0.01 | 252 | 1.9 | 0.86 | 27.4 | 11.8 | 1.09 |
Strains of fluorescent pseudomonads used in each treatment are shown in Table 1.
HRZ = Inside rhizomes of healthy-appearing ferns from a fernery in Florida without history of Benlate use; SRS = Rhizosphere (roots and rhizomes) of symptomatic ferns in Costa Rica; SRZ = inside rhizomes of symptomatic ferns in Costa Rica.
Mean of 8 replicate plants per treatment. Means followed by different letters are significantly different at P = 0.01.
Figure 7Neighbor-joining (NJ) bootstrap consensus tree of partial 16S rRNA gene (1412 bp) illustrating phylogenetic relationship among fluorescent Pseudomonas spp. isolated from inside rhizomes 17 months after inoculation.
The first number in strain codes indicates the treatment number from the inoculation experiment (Table 2). The analyses were done with MEGA version 5 [6], and the numbers at each node represent bootstrap value (1000 replicates). Scale bar: substitutions/site.
Summary of the percentage of fluorescent pseudomonads reisolated in each treatment group belonging to phylogenetic clusters of the inoculated strains shown in Figure 1.
| Percentage of reisolated strains from each treatment belonging to the phylogenetic clusters of the inoculated strains | |||||
| Treatment | |||||
| Phylogenetic Clusters | SRZ (trt 3) | SRZ (trt 4) | SRS (trt 5) | SRS-INT | Closest matches of type strains with highest SeqMatch score |
|
| 0 | 0 | 0 | 0 | |
|
| 26 | 76 | 47 | 72 |
|
|
| 12 | 22 | 26 | 0 |
|
|
| 40 | 1 | 24 | 0 |
|
|
| 21 | 1 | 3 | 26 |
|
INT indicates isolates obtained following printing of rhizomes showing internal discoloration as described in the methods.
Taxa of fluorescent pseudomonads in the Ribosomal Database Project II with 16S rRNA gene sequences most similar to those isolates in each cluster.