Literature DB >> 23515838

Alternative splicing in ascomycetes.

Frank Kempken1.   

Abstract

Alternative splicing is a complex and regulated process, which results in mRNA with different coding capacities from a single gene. Extend and types of alternative splicing vary greatly among eukaryotes. In this review, I focus on alternative splicing in ascomycetes, which in general have significant lower extend of alternative splicing than mammals. Yeast-like species have low numbers of introns and consequently alternative splicing is lower compared to filamentous fungi. Several examples from single studies as well as from genomic scale analysis are presented, including a survey of alternative splicing in Neurospora crassa. Another focus is regulation by riboswitch RNA and alternative splicing in a heterologous system, along with putative protein factors involved in regulation.

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Year:  2013        PMID: 23515838     DOI: 10.1007/s00253-013-4841-x

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  12 in total

1.  BEM46 shows eisosomal localization and association with tryptophan-derived auxin pathway in Neurospora crassa.

Authors:  K Kollath-Leiß; C Bönniger; P Sardar; F Kempken
Journal:  Eukaryot Cell       Date:  2014-06-13

Review 2.  Reassessing the Use of Undecanoic Acid as a Therapeutic Strategy for Treating Fungal Infections.

Authors:  Antonio Rossi; Maíra P Martins; Tamires A Bitencourt; Nalu T A Peres; Carlos H L Rocha; Flaviane M G Rocha; João Neves-da-Rocha; Marcos E R Lopes; Pablo R Sanches; Júlio C Bortolossi; Nilce M Martinez-Rossi
Journal:  Mycopathologia       Date:  2021-04-09       Impact factor: 2.574

3.  Genome-wide identification and functional analysis of circRNAs in Trichophyton rubrum conidial and mycelial stages.

Authors:  Xingwei Cao; Xingye Xu; Jie Dong; Ying Xue; Lilian Sun; Yafang Zhu; Tao Liu; Qi Jin
Journal:  BMC Genomics       Date:  2022-01-04       Impact factor: 3.969

4.  Pre-mRNA splicing is modulated by antifungal drugs in the filamentous fungus Neurospora crassa.

Authors:  Niege S Mendes; Patricia M Silva; Rafael Silva-Rocha; Nilce M Martinez-Rossi; Antonio Rossi
Journal:  FEBS Open Bio       Date:  2016-03-14       Impact factor: 2.693

5.  Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data.

Authors:  Martin Převorovský; Martina Hálová; Kateřina Abrhámová; Jiří Libus; Petr Folk
Journal:  Biomed Res Int       Date:  2016-12-06       Impact factor: 3.411

6.  Alternative Splicing of the Aflatoxin-Associated Baeyer⁻Villiger Monooxygenase from Aspergillus flavus: Characterisation of MoxY Isoforms.

Authors:  Carmien Tolmie; Martha S Smit; Diederik J Opperman
Journal:  Toxins (Basel)       Date:  2018-12-05       Impact factor: 5.075

7.  Alternative Splicing in Heat Shock Protein Transcripts as a Mechanism of Cell Adaptation in Trichophyton rubrum.

Authors:  João Neves-da-Rocha; Tamires A Bitencourt; Vanderci M de Oliveira; Pablo R Sanches; Antonio Rossi; Nilce M Martinez-Rossi
Journal:  Cells       Date:  2019-10-05       Impact factor: 6.600

8.  Evidence of a New MoYpd1p Phosphotransferase Isoform in the Multistep Phosphorelay System of Magnaporthe oryzae.

Authors:  Sri Bühring; Alexander Yemelin; Thomas Michna; Stefan Tenzer; Stefan Jacob
Journal:  J Fungi (Basel)       Date:  2021-05-15

9.  Comparative Study on Alternative Splicing in Human Fungal Pathogens Suggests Its Involvement During Host Invasion.

Authors:  Patricia Sieber; Kerstin Voigt; Philipp Kämmer; Sascha Brunke; Stefan Schuster; Jörg Linde
Journal:  Front Microbiol       Date:  2018-10-02       Impact factor: 5.640

Review 10.  Robustness during Aging-Molecular Biological and Physiological Aspects.

Authors:  Emanuel Barth; Patricia Sieber; Heiko Stark; Stefan Schuster
Journal:  Cells       Date:  2020-08-08       Impact factor: 6.600

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