Literature DB >> 23514513

Exact solution of the Zwanzig-Lauritzen model of polymer crystallization under tension.

Himadri S Samanta1, D Thirumalai.   

Abstract

We solve a two-dimensional model for polymer chain folding in the presence of mechanical pulling force (f) exactly using equilibrium statistical mechanics. Using analytically derived expression for the partition function we determine the phase diagram for the model in the f-temperature (T) plane. A square root singularity in the susceptibility indicates a second order phase transition from a folded to an unfolded state at a critical force (fc) in the thermodynamic limit of infinitely long polymer chain. The temperature dependence of fc shows a reentrant phase transition, which is reflected in an increase in fc as T increases below a threshold value. As a result, for a range of f values, the unfolded state is stable at both low and high temperatures. The high temperature unfolded state is stabilized by entropy whereas the low temperature unfolded state is dominated by favorable energy. The exact calculation could serve as a benchmark for testing approximate theories that are used in analyzing single molecule pulling experiments.

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Year:  2013        PMID: 23514513      PMCID: PMC3612122          DOI: 10.1063/1.4794154

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  21 in total

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Journal:  Phys Rev Lett       Date:  2003-02-25       Impact factor: 9.161

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5.  Minimum energy compact structures of random sequences of heteropolymers.

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6.  Mechanical unfolding of RNA hairpins.

Authors:  Changbong Hyeon; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-04       Impact factor: 11.205

7.  Secondary structure formation of homopolymeric single-stranded nucleic acids including force and loop entropy: implications for DNA hybridization.

Authors:  T R Einert; H Orland; R R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2011-06-01       Impact factor: 1.890

8.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

9.  Elasticity and unfolding of single molecules of the giant muscle protein titin.

Authors:  L Tskhovrebova; J Trinick; J A Sleep; R M Simmons
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

10.  Phase diagram for unzipping DNA with long-range interactions.

Authors:  Eran A Mukamel; Eugene I Shakhnovich
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-09-19
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