Literature DB >> 23508333

Automated discovery of chemically reasonable elementary reaction steps.

Paul M Zimmerman1.   

Abstract

Due to the significant human effort and chemical intuition required to locate chemical reaction pathways with quantum chemical modeling, only a small subspace of possible reactions is usually investigated for any given system. Herein, a systematic approach is proposed for locating reaction paths that bypasses the required human effort and expands the reactive search space, all while maintaining low computational cost. To achieve this, a range of intermediates are generated that represent potential single elementary steps away from a starting structure. These structures are then screened to identify those that are thermodynamically accessible, and then feasible reaction paths to the remaining structures are located. This strategy for elementary reaction path finding is independent of atomistic model whenever bond breaking and forming are properly described. The approach is demonstrated to work well for upper main group elements, but this limitation can easily be surpassed. Further extension will allow discovery of multistep reaction mechanisms in a single computation. The method is highly parallel, allowing for effective use of modern large-scale computational clusters.
Copyright © 2013 Wiley Periodicals, Inc.

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Year:  2013        PMID: 23508333     DOI: 10.1002/jcc.23271

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  25 in total

1.  Mechanistic Investigations of the Iron(III)-Catalyzed Carbonyl-Olefin Metathesis Reaction.

Authors:  Jacob R Ludwig; Susan Phan; Christopher C McAtee; Paul M Zimmerman; James J Devery; Corinna S Schindler
Journal:  J Am Chem Soc       Date:  2017-07-28       Impact factor: 15.419

2.  Regiodivergent Glycosylations of 6-Deoxy-erythronolide B and Oleandomycin-Derived Macrolactones Enabled by Chiral Acid Catalysis.

Authors:  Jia-Hui Tay; Alonso J Argüelles; Matthew D DeMars; Paul M Zimmerman; David H Sherman; Pavel Nagorny
Journal:  J Am Chem Soc       Date:  2017-06-19       Impact factor: 15.419

3.  Lewis Acid Catalyzed Carbonyl-Olefin Metathesis.

Authors:  Jacob R Ludwig; Corinna S Schindler
Journal:  Synlett       Date:  2017       Impact factor: 2.454

4.  Regulation and Plasticity of Catalysis in Enzymes: Insights from Analysis of Mechanochemical Coupling in Myosin.

Authors:  Xiya Lu; Victor Ovchinnikov; Darren Demapan; Daniel Roston; Qiang Cui
Journal:  Biochemistry       Date:  2017-03-01       Impact factor: 3.162

5.  Discovery of conical intersection mediated photochemistry with growing string methods.

Authors:  Cody Aldaz; Joshua A Kammeraad; Paul M Zimmerman
Journal:  Phys Chem Chem Phys       Date:  2018-11-07       Impact factor: 3.676

6.  What Does the Machine Learn? Knowledge Representations of Chemical Reactivity.

Authors:  Joshua A Kammeraad; Jack Goetz; Eric A Walker; Ambuj Tewari; Paul M Zimmerman
Journal:  J Chem Inf Model       Date:  2020-03-03       Impact factor: 4.956

7.  Quantum Chemical Investigation of Dimerization in the Schlenk Equilibrium of Thiophene Grignard Reagents.

Authors:  Ethan R Curtis; Matthew D Hannigan; Andrew K Vitek; Paul M Zimmerman
Journal:  J Phys Chem A       Date:  2020-02-18       Impact factor: 2.781

8.  Iron(III)-catalysed carbonyl-olefin metathesis.

Authors:  Jacob R Ludwig; Paul M Zimmerman; Joseph B Gianino; Corinna S Schindler
Journal:  Nature       Date:  2016-04-27       Impact factor: 49.962

9.  Experimental and Computational Studies on Regiodivergent Chiral Phosphoric Acid Catalyzed Cycloisomerization of Mupirocin Methyl Ester.

Authors:  Sibin Wang; Alonso J Arguelles; Jia-Hui Tay; Miyuki Hotta; Paul M Zimmerman; Pavel Nagorny
Journal:  Chemistry       Date:  2020-03-18       Impact factor: 5.236

10.  Combined Theoretical and Experimental Investigation of Lewis Acid-Carbonyl Interactions for Metathesis.

Authors:  Tanmay Malakar; Carly S Hanson; James J Devery; Paul M Zimmerman
Journal:  ACS Catal       Date:  2021-03-25       Impact factor: 13.084

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