Literature DB >> 23500629

As good as it gets? Folding molecular dynamics simulations of the LytA choline-binding peptide result to an exceptionally accurate model of the peptide structure.

Ilias Patmanidis1, Nicholas M Glykos.   

Abstract

Folding simulations of a choline-binding peptide derived from the Streptococcus pneumoniae LytA protein converged to a model of the peptide's folded state structure which is in outstanding agreement with the experimentally-determined structures, reaching values for the root mean squared deviation as low as 0.24Å for the peptide's backbone atoms and 0.65Å for all non-hydrogen atoms.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23500629     DOI: 10.1016/j.jmgm.2013.02.004

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  2 in total

1.  Characterizing a partially ordered miniprotein through folding molecular dynamics simulations: Comparison with the experimental data.

Authors:  Athanasios S Baltzis; Nicholas M Glykos
Journal:  Protein Sci       Date:  2015-12-16       Impact factor: 6.725

2.  A molecular dynamics simulation study on the propensity of Asn-Gly-containing heptapeptides towards β-turn structures: Comparison with ab initio quantum mechanical calculations.

Authors:  Dimitrios A Mitsikas; Nicholas M Glykos
Journal:  PLoS One       Date:  2020-12-03       Impact factor: 3.240

  2 in total

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