| Literature DB >> 23497342 |
Nancy Alvarez-Corrales1, Raija K Ahmed, Carol A Rodriguez, Kithiganahalli N Balaji, Rebeca Rivera, Ramakrishna Sompallae, Nalini K Vudattu, Sven E Hoffner, Alimuddin Zumla, Lelany Pineda-Garcia, Markus Maeurer.
Abstract
BACKGROUND: A better understanding of the quality of cellular immune responses directed against molecularly defined targets will guide the development of TB diagnostics and identification of molecularly defined, clinically relevant M.tb vaccine candidates.Entities:
Mesh:
Substances:
Year: 2013 PMID: 23497342 PMCID: PMC3599548 DOI: 10.1186/1471-2334-13-125
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Summary of test targets
| Rv0447c | NP854118 (Pool 1) | Probable cyclopropane fatty acyl phospholipid synthase. | 427 | Methyl transferase activity. Cyclopropane fatty acyl phospholipid synthase activity. Lipid biosynthetic process [ |
| Rv2940c | YP_976584 (Pool 2) | Mycocerosic acid synthase | 2111 | Lipid biosynthetic process. Oxido-reduction and transferase activity, Cofactor binding. Location at the cell wall. [ |
| Rv3347c | YP_177963 (Pool 3) | PPE family protein | 3157 | Function unknown. Gly-Ala-Asn rich protein, interacts with the host system by inhibition of antigen processing. [ |
| Rv2453c | CAA16030 (Pool 4) | Probable molybdopterin-guanine dinucleotide biosynthesis Protein A | 201 | Molybdenum cofactor biosynthesis. Molecular function as GTP binding. Located at the cytoplasm membrane. [ |
| Rv1886c | CAB10044 (Pool 5) | Antigen 85B | 325 | Fibronectin binding protein. Acyltransferase activity. Secreted protein, also located at cell wall, plasma membrane. [ |
| Rv1690 | CAB10947 (Pool 6) | Probable lipoprotein | 127 | Putative uncharacterized protein. Protein binding, cellular component plasma membrane.[ |
| Rv3019c | CAA16104 (Pool 7) | ESAT-6 like protein | 96 | Belongs to ESAT-6 (esx) family, Protein-protein interaction [ |
| Rv2957 | CAB05419 (Pool 8) | PGL/p-HBAD biosynthesis glycosyltrans-ferase MT3031 | 256 | Glycosyl transferase activity, transferring hexosyl groups. Glycolipid biosynthetic function. Identified as a drug target. [ |
| Rv1085c | CAA17201 (Pool 9) | UPF0073 membrane protein | 242 | Belongs to the UPF0073 (HIy-III) family. Cytolysis. Sub cellular location in cell membrane [ |
| Rv0066c | CAA16247 (Pool 10) | Isocitrate dehydrogenase, NADP-dependent- icd2. | 745 | Oxidoreductase function. NAD or NADH binding. Isocitrate dehidrogenase (NADP+) activity. Magnesium ion binding. Protein homodimerization. [ |
| Rv2958c | CAB05418 (Pool 11) | PGL/p-HBAD biosynthesis glycosyltrans-ferase | 428 | Glycolipid biosynthetic process, pathogenesis, Glycosyl transferase activity. Immune evasion or - tolerance [ |
| Rv2962c | CAB05415 (Pool 12) | PGL/p-HBAD biosynthesis rhamnosyl-transferase | 449 | Glycolipid biosynthetic process, pathogenesis. Glycosyl transferase activity. Evasion or tolerance concerning to the host immune response. [ |
| Rv3804c/1886 | CAA17868/CAB10044 | Ag85A/Ag85B Fibronecting binding protein peptide pool | 338/325 | Belongs to the Ag85 family, contains Esterase D. Possesses mycolyl transferase activity. [ |
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| Rv3804c | CAA17868 | Ag85A. Secreted antigen 85A. Mycolyl transferase 85A. fbpA. Ag85 complex | 338 | Responsible for high affinity of mycobacteria to fibronectin. Possesses mycolyl transferase for biogenesis of trehalose dimycolate. [ |
| Rv1886c | CAB10044 | Ag85B. Secreted antigen 85B. Mycolyl transferase 85B. fbpB. Ag85 complex | 325 | Fibronectin binding protein. Acyltransferase activity. Response to antibiotic. Secreted protein also located at cell wall, extracellular region. [ |
| Rv3875 | CAA56099 | ESAT-6. 6 KDa early secretory antigenic target. esxA | 95 | Function unknown. Elicit high level of IFNgamma during the first phase of protective immune response. Secreted protein, cell wall and cytoplasm. [ |
| Rv3874 | CAA17966 | CFP-10. 10 KDa culture filtrate antigen | 100 | ESAT-6 like protein esxB. Forms a tight 1:1 complex with EsxA. Protein binding. Host cell surface binding. Pathogenesis. Protein secretion. [ |
| Rv0754 | CAE55319 | PE_PGR11. PE-PGRS family protein | 584 | Member of |
| Rv0978c | CAE55343 | PE_PGR17. PE-PGRS family protein | 331 | Member of |
| Rv1917c | CAE55440 | PPE34. PPE family protein | 1459 | Member of |
| Rv0288 | CAA17363 | TB10.4. Low molecular weight protein. (M.tb) | 96 | Belongs to theESAT-6 (esx) family. Molecular function protein binding. Involved in virulence. Immunogenic. [ |
Figure 1IFN-γ boxplots of immune reactivity in blood stimulated with antigens/peptides that showed significant differences between groups (group 1, TB + patients, group 2, TB- other pulmonary diseases, group 3, frequent exposure, yet clinically healthy). Antigens were identified after testing a broad panel of M.tb antigens (see Table 1). Only statistically significant different IFN-γ responses are shown. Strong recognition of Ag85B (Rv1886c), PGL/p-HBAD biosynthesis glycosyltransferase (Rv2958c), PGL/p-HBAD biosynthesis rhamnosyl-transferase (Rv2962c) and PPE55 (Rv3347c). Recombinant proteins Ag85A (Rv3804) and Ag85B (Rv1886c) were differentially recognized among TB + and TB- groups defined by IFN-γ release. The thick lines (inside the boxplots) represent median values.
Statistically different cytokine production in groups 1(TB patients), 2 (patients with other pulmonary diseases) and 3 (negative TB cases but highly exposed)
| SEA/B | Group1 vs Group2 | 0.001 |
| SEA/B | Group1 vs Group3 | < 0.001 |
| Rv1886c | Group1 vs Group3 | 0.015 |
| Rv2958c | Group1 vs Group3 | 0.020 |
| Rv2958c | Group2 vs Group3 | 0.020 |
| Rv2962c | Group1 vs Group3 | 0.021 |
| Rv2962c | Group2 vs Group3 | 0.021 |
| Rv3347c | Group1 vs Group3 | 0.034 |
| Rv3804c | Group1 vs Group3 | 0.031 |
| Rv1886c | Group1 vs Group2 | 0.016 |
| Rv1886c | Group1 vs Group3 | 0.002 |
Figure 2IL-17 production shows a different pattern of cellular immune recognition as compared to IFN-γ. IL-17 production in blood was statistically different in response to the antigens Ag85B (Rv1886c), TB10.4 (Rv0288), PPE - PGR11 (Rv0978c) and PPE34 (Rv1917c). The thick lines (inside the boxplots) represent median values. Identical patient cohorts as in Figure 1.
Distribution of IFN-γ levels for the antigens associated with statistically different cytokine production between groups at 5% level
| Rv1886c | Group1 vs Group2 | 0.050 |
| Rv1886c | Group1 vs Group3 | 0.029 |
| Rv0288 | Group1 vs Group3 | 0.030 |
| Rv0288 | Group2 vs Group3 | 0.027 |
| Rv0978c | Group1 vs Group3 | 0.003 |
| Rv0978c | Group2 vs Group3 | 0.002 |
| Rv1917c | Group1 vs Group3 | 0.005 |
| Rv1917c | Group2 vs Group3 | 0.008 |
Differences in IFN-γ between groups were examined using a t-test; adjustment for multiplicity was applied on the resulting p-values from the tests. (group 1: TB+, AFS and culture positive, 2: other pulmonary diseases, no exposure records to TB, 3: health care workers, frequently exposed to M.tb, yet clinically healthy). Only statistically relevant differences are listed.
Description of the general population, clinical characteristics, microbiology and immunological test results
| Pos: 23 | Pos: 26 | MTB: 23 | altered: 23 | Female: 17 | Pulmonary TB (26), Pleural TB (3) extra-pulmonary TB (9) | |
| Neg: 10 | Neg:12 | Neg: 11 | non altered: 5 | Male: 21 | ||
| Ind: 5 | No data: 0 | Cont: 1 No data: 3 | no data: 10 | | ||
| Pos: 24 | Pos: 0 | Neg: 79 | altered: 33 | Female: 56 | Allergy (1) asthma (17), EPOC (20), (non-TB) pneumonia (8), lung cancer (4), (non-TB) pleural effusion (1), bronchitis (5), other (25) otitis, rhinitis, influenza, diabetes, heart disease. | |
| Neg: 54 | Neg: 81 | Cont: 1 | non altered: 7 | Male: 25 | ||
| Ind: 3 | No data: 0 | No data: 1 | no data: 41 | | ||
| Pos: 11 | Pos: 0 | Neg: 19 | altered: 10 | Female: 19 | Nurses and TB/HIV health care workers (19), previous TB with successful treatment regimen in the past (at least 2 years) but no current TB (10) | |
| Neg: 17 | Neg: 19 | No data: 10 | non altered: 2 | Male: 10 | ||
| Ind: 1 | No data: 10 | no data: 17 |
Ind: indeterminate; Neg: negative, Pos: positive.
Compilation of the antigen-specific response analysis
| | IFN-γ (%) | IL-17 (%) | IFN-γ (%) | IL-17 (%) | IFN-γ (%) | IL-17 (%) |
| 10/38 (26) | 10/38 (26) | 24/81 (30) | 17/81 (21) | 12/29 (41) | 11/29 (38) | |
| 3/38 (8) | | 8/81 (10) | | 3/29 (10) | | |
| 5/38 (13) | | 12/81 (15) | | 12/29 (41) | | |
| 4/38 (11) | | 11/81 (14) | | 9/29 (31) | | |
| 14/38 (37) | 10/38 (26) | 37/81 (46) | 27/81 (33) | 15/29 (52) | 14/29 (48) | |
| 6/38 (16) | | 18/81 (22) | | 8/29 (28) | | |
| 8/38 (21) | 10/38 (26) | 29/81 (36) | 37/81 (46) | 9/29 (31) | 16/29 (55) | |
| 7/38 (18) | 11/38 (29) | 30/81 (37) | 33/81 (41) | 11/29 (38) | 12/29 (41) | |
| 6/38 (16) | | 11/81 (14) | | 4/29 (14) | | |
| 3/38 (8) | | 14/81 (17) | | 4/29 (14) | | |
| 4/38 (11) | 14/38 (37) | 10/81 (12) | 31/81 (38) | 7/29 (24) | 13/29 (45) | |
| 3/38 (8) | 10/38 (26) | 10/81 (12) | 32/81 (40) | 8/29 (28) | 15/29 (28) | |
| 12/25(48) | 12/25 (48) | 40/65 (62) | 47/65 (72) | 11/17 (65) | 15/17 (88) | |
| 15/25 (60) | 15/25 (60) | 40/65 (62) | 44/65 (68) | 12/17 (71) | 12/17 (71) | |
| 13/20 (65) | 8/20 (40) | 32/48 (67) | 25/48 (52) | 13/14 (93) | 7/14 (50) | |
| 9/20 (45) | 8/20 (40) | 24/48 (50) | 11/48 (23) | 6/14 (43) | 5/14 (36) | |
| 3/11 (27) | | 3/21 (14) | | 0/3 (0) | | |
| 3/11 (27) | | 3/21 (14) | | 0/3 (0) | | |
| 7/9 (78) | | 6/21 (29) | | 0/5 (0) | | |
| 3/5 (60) | 1/5 (20) | 1/17 (6) | 5/17 (29) | 1/3 (33) | 3/3 (100) | |
| 2/5 (40) | 0/5 (0) | 4/17 (24) | 5/17 (29) | 0/3 (0) | 2/3 (66) | |
| 2/5 (40) | 1/5 (20) | 2/17 (12) | 7/17 (41) | 0/3 (0) | 3/3 (100) | |
| 1/5 (20) | 1/5 (20) | 1/17 (6) | 6/17 (35) | 0/3 (0) | 2/3 (66) | |
Group 1, TB + patients, group 2, TB- other pulmonary diseases, group 3, frequent M.tb exposure, yet clinically healthy.