Literature DB >> 23495904

Incorporating protein flexibility into docking and structure-based drug design.

Xavier Barril1, Xavier Fradera.   

Abstract

The use of structure in drug design has become widespread, mainly thanks to recent advances in crystallography. Nevertheless, biological macromolecules are intrinsically flexible and it is increasingly evident that their function depends critically on both their structure and dynamics. In this review the authors discuss the implications of protein flexibility for drug design and review recent progress in incorporating protein flexibility into docking and structure-based drug design.

Year:  2006        PMID: 23495904     DOI: 10.1517/17460441.1.4.335

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  6 in total

1.  Docking-undocking combination applied to the D3R Grand Challenge 2015.

Authors:  Sergio Ruiz-Carmona; Xavier Barril
Journal:  J Comput Aided Mol Des       Date:  2016-10-05       Impact factor: 3.686

2.  Insights from comprehensive multiple receptor docking to HDAC8.

Authors:  Michael Brunsteiner; Pavel A Petukhov
Journal:  J Mol Model       Date:  2012-03-20       Impact factor: 1.810

3.  Target flexibility: an emerging consideration in drug discovery and design.

Authors:  Pietro Cozzini; Glen E Kellogg; Francesca Spyrakis; Donald J Abraham; Gabriele Costantino; Andrew Emerson; Francesca Fanelli; Holger Gohlke; Leslie A Kuhn; Garrett M Morris; Modesto Orozco; Thelma A Pertinhez; Menico Rizzi; Christoph A Sotriffer
Journal:  J Med Chem       Date:  2008-09-12       Impact factor: 7.446

4.  Polyphony: superposition independent methods for ensemble-based drug discovery.

Authors:  William R Pitt; Rinaldo W Montalvão; Tom L Blundell
Journal:  BMC Bioinformatics       Date:  2014-09-30       Impact factor: 3.169

5.  Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery.

Authors:  Marcus Fischer; Ryan G Coleman; James S Fraser; Brian K Shoichet
Journal:  Nat Chem       Date:  2014-05-25       Impact factor: 24.427

Review 6.  Computer-Aided Drug Design in Epigenetics.

Authors:  Wenchao Lu; Rukang Zhang; Hao Jiang; Huimin Zhang; Cheng Luo
Journal:  Front Chem       Date:  2018-03-12       Impact factor: 5.221

  6 in total

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