Literature DB >> 23493303

An epigenetic roadmap for cardiomyocyte differentiation.

Michael S Parmacek1, Jonathan A Epstein.   

Abstract

Wamstad et al have provided a robust global analysis of histone markers and gene expression at 4 stages of murine embryonic stem (ES) cell differentiation into cardiac myocytes. This detailed data set will provide a rich opportunity for generating and testing hypotheses related to combinatorial transcriptional regulation of gene expression and epigenetic regulation of cell fate decisions in cardiac lineages.

Entities:  

Year:  2013        PMID： 23493303      PMCID： PMC4217199          DOI： 10.1161/CIRCRESAHA.113.301134

Source DB:  PubMed          Journal:  Circ Res        ISSN： 0009-7330            Impact factor:   17.367


  9 in total

Review 1.  Translating the histone code.

Authors:  T Jenuwein; C D Allis
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

2.  RNA: Genome-wide views of long non-coding RNAs.

Authors:  Mary Muers
Journal:  Nat Rev Genet       Date:  2011-10-12       Impact factor: 53.242

3.  ChIP-Seq identification of weakly conserved heart enhancers.

Authors:  Matthew J Blow; David J McCulley; Zirong Li; Tao Zhang; Jennifer A Akiyama; Amy Holt; Ingrid Plajzer-Frick; Malak Shoukry; Crystal Wright; Feng Chen; Veena Afzal; James Bristow; Bing Ren; Brian L Black; Edward M Rubin; Axel Visel; Len A Pennacchio
Journal:  Nat Genet       Date:  2010-08-22       Impact factor: 38.330

4.  Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.

Authors:  Aibin He; Sek Won Kong; Qing Ma; William T Pu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-17       Impact factor: 11.205

5.  Stage-specific optimization of activin/nodal and BMP signaling promotes cardiac differentiation of mouse and human pluripotent stem cell lines.

Authors:  Steven J Kattman; Alec D Witty; Mark Gagliardi; Nicole C Dubois; Maryam Niapour; Akitsu Hotta; James Ellis; Gordon Keller
Journal:  Cell Stem Cell       Date:  2011-02-04       Impact factor: 24.633

Review 6.  ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions.

Authors:  Terrence S Furey
Journal:  Nat Rev Genet       Date:  2012-10-23       Impact factor: 53.242

7.  Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage.

Authors:  Joseph A Wamstad; Jeffrey M Alexander; Rebecca M Truty; Avanti Shrikumar; Fugen Li; Kirsten E Eilertson; Huiming Ding; John N Wylie; Alexander R Pico; John A Capra; Genevieve Erwin; Steven J Kattman; Gordon M Keller; Deepak Srivastava; Stuart S Levine; Katherine S Pollard; Alisha K Holloway; Laurie A Boyer; Benoit G Bruneau
Journal:  Cell       Date:  2012-09-12       Impact factor: 41.582

Review 8.  ChIP-seq: advantages and challenges of a maturing technology.

Authors:  Peter J Park
Journal:  Nat Rev Genet       Date:  2009-09-08       Impact factor: 53.242

9.  Large-scale discovery of enhancers from human heart tissue.

Authors:  Dalit May; Matthew J Blow; Tommy Kaplan; David J McCulley; Brian C Jensen; Jennifer A Akiyama; Amy Holt; Ingrid Plajzer-Frick; Malak Shoukry; Crystal Wright; Veena Afzal; Paul C Simpson; Edward M Rubin; Brian L Black; James Bristow; Len A Pennacchio; Axel Visel
Journal:  Nat Genet       Date:  2011-12-04       Impact factor: 38.330
  9 in total
  2 in total

1.  Mapping Human Pluripotent-to-Cardiomyocyte Differentiation: Methylomes, Transcriptomes, and Exon DNA Methylation "Memories".

Authors:  Joshua D Tompkins; Marc Jung; Chang-Yi Chen; Ziguang Lin; Jingjing Ye; Swetha Godatha; Elizabeth Lizhar; Xiwei Wu; David Hsu; Larry A Couture; Arthur D Riggs
Journal:  EBioMedicine       Date:  2016-01-19       Impact factor: 8.143

2.  Transcriptome and DNA Methylome Dynamics during Triclosan-Induced Cardiomyocyte Differentiation Toxicity.

Authors:  Guizhen Du; Mingming Yu; Lingling Wang; Weiyue Hu; Ling Song; Chuncheng Lu; Xinru Wang
Journal:  Stem Cells Int       Date:  2018-10-29       Impact factor: 5.443
  2 in total

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