| Literature DB >> 23492674 |
Amir Mohammad Malvandi1, Jalil Mehrzad, Masoud Saleh Moghaddam.
Abstract
OBJECTIVES: Pattern recognition receptors (PRRs) are the main part in the innate immune response. Human glioblastoma cell line (U87-MG) is an established adherent cell line model of this common cancer; due to genetic variations between individuals it is likely more suitable for investigating molecular aspects of innate immunity. Therefore, we undertook a novel characterization of the immune phenotype of U87-MG toward establishing a base for future researches.Entities:
Keywords: Human glioblastoma cell line (U87-MG); Innate immunity; Quantitative RT-PCR Toll-like receptors
Year: 2011 PMID: 23492674 PMCID: PMC3586846
Source DB: PubMed Journal: Iran J Basic Med Sci ISSN: 2008-3866 Impact factor: 2.699
Primer characters were used in qPCR.
| Gene | Primer | Sequense (5' -> 3') | Amplicon Size (bp) | References |
|---|---|---|---|---|
| TLR2 | Forward | ATCCTCCAATCAGGCTTCTCT | 163 | 1 |
| Reverse | ACACCTCTGTAGGTCACTGTTG | |||
| TLR4 | Forward | ATATTGACAGGAAACCCCATCCA | 300 | 1 |
| Reverse | AGAGAGATTGAGTAGGGGCATTT | |||
| CD14 | Forward | ACTTGCACTTTCCAGCTTGC | 202 | 1 |
| Reverse | GCCCAGTCCAGGATTGTCAG | |||
| MyD88 | Forward | GACCCCTGGTGCAAGTACC | 197 | 1 |
| Reverse | AGTAGCTTACAACGCATGACAG | |||
| GAPDH | Forward | GAGCCACATCGCTCAGACAC | 150 | 2 |
| Reverse | CATGTAGTTGAGGTCAATGAAGG |
Figure 1Agarose gel electrophoresis documentation under UV light. Part (a) shows result of RT-PCR experiment for U87-MG cell line which indicated TLR2, CD14, TLR4 and MyD88 genes expression, Non-template control also was performed in favor of PCR reaction quality. Part (b) shows result of the same RT-PCR experiment for different PBMCs isolated from three healthy individuals. GAPDH gene was used as control of cDNA quality for each sample. All reactions were performed together in a same PCR machine at one time.
Figure 2.Quantitative real-time PCR analysis of TLR2, TLR4, MyD88 and CD14 in U87-MG cell line (a) and PBMCs of healthy individuals (b). Stars indicate statistically significant difference. Details of statistical analysis are described in the text. Fold changes in each sample were compared to its GAPDH gene expression level (mentioned as control). Data are presented as means±SD.
Figure 3.Gene expression fold ratio of U87-MG cell line versus PBMCs of healthy individuals. Ratios are calculated by dividing the qPCR obtained genes expression levels in U87-MG cells into their expression levels (folds) in PBMC. Data in form mean±standard deviation were used for calculations. In the case of MyD88 to visualize a real ratio, because of down-regulation of this gene in both cell types, the ratio is multiply with a minus coefficient (-1) and then presented in the graph. As it shown in the graph the expression level of TLR2 and TLR4 are up-regulated near 1.5 times in U87-MG cell line in comparison to PBMC. In contrast, MyD88 was down-regulated near 2 times in U87-MG cells than PBMC. Interestingly, CD14 was detected near 8 times down-regulated in U87-MG cells less than PBMC and it is significantly different from other ratios (P< 0 .001).