Literature DB >> 23478746

The ENCODE project: implications for psychiatric genetics.

D H Kavanagh1, S Dwyer, M C O'Donovan, M J Owen.   

Abstract

The ENCyclopedia Of DNA Elements (ENCODE) project is a public research consortium that aims to identify all functional elements of the human genome sequence. The project comprised 1640 data sets, from 147 different cell type and the findings were released in a coordinated set of 34 publications across several journals. The ENCODE publications report that 80.4% of the human genome displays some functionality. These data have important implications for interpreting results from large-scale genetics studies. We reviewed some of the key findings from the ENCODE publications and discuss how they can influence or inform further investigations into the genetic factors contributing to neuropsychiatric disorders.

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Year:  2013        PMID: 23478746     DOI: 10.1038/mp.2013.13

Source DB:  PubMed          Journal:  Mol Psychiatry        ISSN: 1359-4184            Impact factor:   15.992


  11 in total

1.  Building a schizophrenia genetic network: transcription factor 4 regulates genes involved in neuronal development and schizophrenia risk.

Authors:  Hanzhang Xia; Fay M Jahr; Nak-Kyeong Kim; Linying Xie; Andrey A Shabalin; Julien Bryois; Douglas H Sweet; Mohamad M Kronfol; Preetha Palasuberniam; MaryPeace McRae; Brien P Riley; Patrick F Sullivan; Edwin J van den Oord; Joseph L McClay
Journal:  Hum Mol Genet       Date:  2018-09-15       Impact factor: 6.150

2.  De Novo Synonymous Mutations in Regulatory Elements Contribute to the Genetic Etiology of Autism and Schizophrenia.

Authors:  Atsushi Takata; Iuliana Ionita-Laza; Joseph A Gogos; Bin Xu; Maria Karayiorgou
Journal:  Neuron       Date:  2016-03-02       Impact factor: 17.173

3.  Transcription start sites and epigenetic analysis of the HSD17B10 proximal promoter.

Authors:  Song-Yu Yang; Carl Dobkin; Xue-Ying He; W Ted Brown
Journal:  BMC Biochem       Date:  2013-07-08       Impact factor: 4.059

4.  An evaluation of a SVA retrotransposon in the FUS promoter as a transcriptional regulator and its association to ALS.

Authors:  Abigail L Savage; Thomas P Wilm; Kejhal Khursheed; Aleksey Shatunov; Karen E Morrison; Pamela J Shaw; Christopher E Shaw; Bradley Smith; Gerome Breen; Ammar Al-Chalabi; Diana Moss; Vivien J Bubb; John P Quinn
Journal:  PLoS One       Date:  2014-03-07       Impact factor: 3.240

5.  Genome-enabled prediction of quantitative traits in chickens using genomic annotation.

Authors:  Gota Morota; Rostam Abdollahi-Arpanahi; Andreas Kranis; Daniel Gianola
Journal:  BMC Genomics       Date:  2014-02-07       Impact factor: 3.969

6.  Neurons Derived From Patient-Specific Induced Pluripotent Stem Cells: a Promising Strategy Towards Developing Novel Pharmacotherapies for Autism Spectrum Disorders.

Authors:  Ryan Mokhtari; Herbert M Lachman
Journal:  EBioMedicine       Date:  2016-06-30       Impact factor: 8.143

Review 7.  The Role of the Eukaryotic Translation Initiation Factor 4E (eIF4E) in Neuropsychiatric Disorders.

Authors:  Inês S Amorim; Gilliard Lach; Christos G Gkogkas
Journal:  Front Genet       Date:  2018-11-23       Impact factor: 4.599

8.  Novel genetic advances in schizophrenia: an interview with Michael O'Donovan.

Authors:  Michael O'Donovan
Journal:  BMC Med       Date:  2015-08-05       Impact factor: 8.775

9.  Leveraging Genomic Annotations and Pleiotropic Enrichment for Improved Replication Rates in Schizophrenia GWAS.

Authors:  Yunpeng Wang; Wesley K Thompson; Andrew J Schork; Dominic Holland; Chi-Hua Chen; Francesco Bettella; Rahul S Desikan; Wen Li; Aree Witoelar; Verena Zuber; Anna Devor; Markus M Nöthen; Marcella Rietschel; Qiang Chen; Thomas Werge; Sven Cichon; Daniel R Weinberger; Srdjan Djurovic; Michael O'Donovan; Peter M Visscher; Ole A Andreassen; Anders M Dale
Journal:  PLoS Genet       Date:  2016-01-25       Impact factor: 5.917

10.  mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.

Authors:  Xu Hua; Rongjun Tang; Xiuxiu Xu; Zhi Wang; Qi Xu; Luxiao Chen; Edgar Wingender; Jie Li; Chenyu Zhang; Jin Wang
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

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