Literature DB >> 23477589

Glycolaldehyde monomer and oligomer equilibria in aqueous solution: comparing computational chemistry and NMR data.

Jeremy Kua1, Melissa M Galloway, Katherine D Millage, Joseph E Avila, David O De Haan.   

Abstract

A computational protocol utilizing density functional theory calculations, including Poisson-Boltzmann implicit solvent and free energy corrections, is applied to study the thermodynamic and kinetic energy landscape of glycolaldehyde in solution. Comparison is made to NMR measurements of dissolved glycolaldehyde, where the initial dimeric ring structure interconverts among several species before reaching equilibrium where the hydrated monomer is dominant. There is good agreement between computation and experiment for the concentrations of all species in solution at equilibrium, that is, the calculated relative free energies represent the system well. There is also relatively good agreement between the calculated activation barriers and the estimated rate constants for the hydration reaction. The computational approach also predicted that two of the trimers would have a small but appreciable equilibrium concentration (>0.005 M), and this was confirmed by NMR measurements. Our results suggest that while our computational protocol is reasonable and may be applied to quickly map the energy landscape of more complex reactions, knowledge of the caveats and potential errors in this approach need to be taken into account.

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Year:  2013        PMID: 23477589     DOI: 10.1021/jp312202j

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  A Novel Colletotrichum graminicola Raffinose Oxidase in the AA5 Family.

Authors:  Martina Andberg; Filip Mollerup; Kirsti Parikka; Sanna Koutaniemi; Harry Boer; Minna Juvonen; Emma Master; Maija Tenkanen; Kristiina Kruus
Journal:  Appl Environ Microbiol       Date:  2017-09-29       Impact factor: 4.792

2.  On the Ability of Formaldehyde to Act as a Tethering Catalyst in Water.

Authors:  Mohammad P Jamshidi; Melissa J MacDonald; André M Beauchemin
Journal:  Orig Life Evol Biosph       Date:  2017-05-04       Impact factor: 1.950

3.  Separating Thermodynamics from Kinetics-A New Understanding of the Transketolase Reaction.

Authors:  Stefan R Marsden; Lorina Gjonaj; Stephen J Eustace; Ulf Hanefeld
Journal:  ChemCatChem       Date:  2017-04-13       Impact factor: 5.686

4.  Kinetics, Products, and Brown Carbon Formation by Aqueous-Phase Reactions of Glycolaldehyde with Atmospheric Amines and Ammonium Sulfate.

Authors:  Alyssa A Rodriguez; Michael A Rafla; Hannah G Welsh; Elyse A Pennington; Jason R Casar; Lelia N Hawkins; Natalie G Jimenez; Alexia de Loera; Devoun R Stewart; Antonio Rojas; Matthew-Khoa Tran; Peng Lin; Alexander Laskin; Paola Formenti; Mathieu Cazaunau; Edouard Pangui; Jean-François Doussin; David O De Haan
Journal:  J Phys Chem A       Date:  2022-08-04       Impact factor: 2.944

5.  Role of Acid in the Co-oligomerization of Formaldehyde and Pyrrole.

Authors:  Jeremy Kua; Alyssa S Miller; Camryn E Wallace; Helen Loli
Journal:  ACS Omega       Date:  2019-12-09
  5 in total

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