Literature DB >> 23476617

N-[(1E)-5-(3-Chloro-phen-yl)-3-methyl-cyclo-hex-2-en-1-yl-idene]hydroxyl-amine.

G Ganesh1, K Murugavel, P S Kannan, S Amirthaganesan, A Subbiahpandi.   

Abstract

The whole of the title mol-ecule, C13H14ClNO, is disordered over two sets of sites with a refined occupancy ratio of 0.560 (6):0.440 (6). The oxime group having a C=N double bond adopts an E conformation. The dihedral angles between the rings (all atoms) are 89.5 (5) (major componenent) and 88.0 (6)° (minor component).

Entities:  

Year:  2013        PMID: 23476617      PMCID: PMC3588505          DOI: 10.1107/S1600536813004698

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of oximes, see: Kukushkin et al. (1996 ▶): Chaudhuri (2003 ▶). For a related structure of a chloro­phenyl oxime derivative, see: Ravichandran et al. (2010 ▶).

Experimental

Crystal data

C13H14ClNO M = 235.70 Tetragonal, a = 19.7898 (8) Å c = 12.4416 (11) Å V = 4872.6 (5) Å3 Z = 16 Mo Kα radiation μ = 0.29 mm−1 T = 295 K 0.25 × 0.22 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.930, T max = 0.946 19841 measured reflections 2394 independent reflections 1765 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.080 wR(F 2) = 0.242 S = 1.05 2394 reflections 255 parameters 93 restraints H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.50 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004698/nk2191sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004698/nk2191Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004698/nk2191Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14ClNODx = 1.285 Mg m3
Mr = 235.70Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/aCell parameters from 2394 reflections
Hall symbol: -I 4adθ = 1.5–26.0°
a = 19.7898 (8) ŵ = 0.29 mm1
c = 12.4416 (11) ÅT = 295 K
V = 4872.6 (5) Å3Block, white
Z = 160.25 × 0.22 × 0.19 mm
F(000) = 1984
Bruker APEXII CCD area-detector diffractometer2394 independent reflections
Radiation source: fine-focus sealed tube1765 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
ω and φ scansθmax = 26.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −24→24
Tmin = 0.930, Tmax = 0.946k = −24→24
19841 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.080Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.242H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.1164P)2 + 10.7128P] where P = (Fo2 + 2Fc2)/3
2394 reflections(Δ/σ)max = 0.026
255 parametersΔρmax = 0.72 e Å3
93 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.5714 (9)0.6964 (10)0.5126 (13)0.064 (4)0.560 (6)
H10.58730.71760.56320.095*0.560 (6)
N10.5172 (8)0.6572 (8)0.5484 (11)0.055 (4)0.560 (6)
C10.5202 (8)0.6216 (9)0.3560 (9)0.053 (4)0.560 (6)
H1A0.56870.62830.35890.064*0.560 (6)
H1B0.50100.65820.31410.064*0.560 (6)
C20.4922 (8)0.6246 (8)0.4677 (7)0.036 (3)0.560 (6)
C30.4336 (8)0.5833 (7)0.4904 (12)0.044 (4)0.560 (6)
H30.41350.58710.55770.053*0.560 (6)
C40.4070 (6)0.5404 (6)0.4205 (13)0.043 (3)0.560 (6)
C50.4409 (10)0.5208 (11)0.3142 (15)0.055 (5)0.560 (6)
H5A0.44800.47230.31280.067*0.560 (6)
H5B0.41110.53230.25500.067*0.560 (6)
C60.5054 (4)0.5550 (4)0.2999 (5)0.0570 (18)0.560 (6)
H60.53770.52380.33310.068*0.560 (6)
C70.34307 (17)0.49939 (17)0.4407 (3)0.057 (2)0.560 (6)
H7A0.33380.47150.37930.085*0.560 (6)
H7B0.30580.52950.45270.085*0.560 (6)
H7C0.34940.47130.50280.085*0.560 (6)
C80.52861 (17)0.55769 (17)0.1822 (3)0.0421 (17)0.560 (6)
C90.58200 (17)0.51926 (17)0.1431 (3)0.0541 (19)0.560 (6)
H90.60540.49040.18880.065*0.560 (6)
C100.60045 (17)0.52400 (17)0.0355 (3)0.063 (3)0.560 (6)
C110.56550 (17)0.56717 (17)−0.0328 (3)0.066 (3)0.560 (6)
H110.57780.5703−0.10480.080*0.560 (6)
C120.51211 (17)0.60561 (17)0.0063 (3)0.057 (2)0.560 (6)
H120.48870.6345−0.03950.069*0.560 (6)
C130.49367 (17)0.60087 (17)0.1138 (3)0.055 (2)0.560 (6)
H130.45800.62660.14000.066*0.560 (6)
Cl10.6641 (5)0.4726 (6)−0.0028 (7)0.105 (2)0.560 (6)
O1'0.5722 (9)0.6919 (14)0.5195 (19)0.072 (7)0.440 (6)
H1'0.57860.71900.56820.108*0.440 (6)
N1'0.5138 (8)0.6543 (11)0.5411 (14)0.049 (5)0.440 (6)
C1'0.5283 (9)0.6052 (12)0.3642 (11)0.054 (5)0.440 (6)
H1'10.56380.57130.36500.064*0.440 (6)
H1'20.54910.64840.34850.064*0.440 (6)
C2'0.4964 (11)0.6083 (10)0.4731 (9)0.039 (4)0.440 (6)
C3'0.4381 (9)0.5666 (9)0.4972 (14)0.036 (3)0.440 (6)
H3'0.41830.57040.56470.043*0.440 (6)
C4'0.4117 (7)0.5234 (8)0.4276 (16)0.040 (3)0.440 (6)
C5'0.4337 (12)0.5340 (13)0.3107 (17)0.049 (4)0.440 (6)
H5'10.45480.49210.28800.059*0.440 (6)
H5'20.39260.53840.26890.059*0.440 (6)
C6'0.4783 (3)0.5882 (4)0.2756 (5)0.0406 (16)0.440 (6)
H6'0.44910.62800.26990.049*0.440 (6)
C7'0.3566 (2)0.4738 (2)0.4612 (4)0.052 (2)0.440 (6)
H7'10.34220.44820.39970.078*0.440 (6)
H7'20.31880.49830.49000.078*0.440 (6)
H7'30.37400.44370.51490.078*0.440 (6)
C8'0.5110 (2)0.5810 (2)0.1653 (4)0.039 (2)0.440 (6)
C9'0.5606 (2)0.5320 (2)0.1517 (4)0.0379 (19)0.440 (6)
H9'0.57220.50390.20860.046*0.440 (6)
C10'0.5928 (2)0.5251 (2)0.0530 (4)0.045 (2)0.440 (6)
C11'0.5754 (2)0.5671 (2)−0.0321 (4)0.052 (3)0.440 (6)
H11'0.59690.5625−0.09810.063*0.440 (6)
C12'0.5258 (2)0.6161 (2)−0.0185 (4)0.058 (3)0.440 (6)
H12'0.51410.6443−0.07550.070*0.440 (6)
C13'0.4936 (2)0.6231 (2)0.0802 (4)0.049 (2)0.440 (6)
H13'0.46040.65580.08920.059*0.440 (6)
Cl1'0.6585 (5)0.4711 (6)0.0291 (8)0.0866 (18)0.440 (6)
U11U22U33U12U13U23
O10.087 (9)0.075 (7)0.028 (5)−0.022 (6)0.006 (5)−0.025 (4)
N10.080 (9)0.053 (7)0.033 (5)0.002 (5)−0.007 (5)−0.011 (5)
C10.067 (6)0.060 (8)0.033 (4)−0.015 (5)0.006 (3)−0.010 (4)
C20.046 (4)0.032 (7)0.032 (3)0.008 (4)0.004 (3)−0.003 (3)
C30.059 (5)0.032 (7)0.042 (4)0.010 (5)0.008 (3)0.002 (4)
C40.046 (4)0.034 (7)0.051 (4)0.004 (4)0.002 (3)0.007 (4)
C50.065 (7)0.050 (6)0.052 (6)−0.004 (6)0.010 (5)−0.012 (4)
C60.058 (4)0.073 (4)0.040 (3)−0.009 (3)0.007 (3)−0.018 (3)
C70.067 (4)0.044 (4)0.060 (4)−0.005 (3)0.015 (3)0.011 (3)
C80.048 (4)0.044 (4)0.035 (3)−0.004 (3)0.000 (3)−0.010 (3)
C90.019 (3)0.082 (5)0.061 (4)0.000 (3)0.009 (2)−0.021 (3)
C100.044 (4)0.090 (7)0.057 (5)−0.020 (4)0.015 (4)−0.011 (4)
C110.052 (4)0.097 (10)0.050 (6)−0.020 (4)0.003 (4)−0.017 (5)
C120.050 (4)0.067 (4)0.055 (4)−0.022 (3)0.011 (3)0.010 (3)
C130.065 (4)0.038 (4)0.063 (5)−0.003 (3)0.019 (4)0.003 (4)
Cl10.073 (2)0.133 (3)0.107 (5)0.0165 (18)0.030 (3)−0.023 (3)
O1'0.051 (8)0.104 (13)0.061 (11)−0.032 (8)0.006 (7)−0.015 (8)
N1'0.034 (6)0.074 (11)0.041 (8)−0.008 (6)0.017 (5)−0.014 (7)
C1'0.060 (7)0.062 (11)0.039 (5)−0.023 (7)0.007 (4)−0.006 (5)
C2'0.054 (6)0.026 (8)0.036 (4)0.009 (6)0.001 (4)−0.002 (4)
C3'0.041 (4)0.027 (8)0.038 (4)0.014 (4)0.008 (3)0.007 (4)
C4'0.049 (5)0.021 (7)0.049 (5)0.011 (4)0.003 (4)0.003 (5)
C5'0.049 (5)0.054 (10)0.043 (5)−0.003 (6)−0.006 (4)−0.013 (5)
C6'0.040 (3)0.045 (4)0.037 (3)0.016 (3)0.000 (3)−0.005 (3)
C7'0.040 (4)0.057 (5)0.058 (5)−0.005 (3)−0.004 (3)0.017 (4)
C8'0.045 (4)0.030 (5)0.041 (4)0.012 (3)−0.005 (3)0.003 (3)
C9'0.016 (4)0.062 (5)0.035 (4)0.011 (3)0.009 (3)−0.009 (3)
C10'0.042 (5)0.065 (6)0.030 (4)−0.003 (4)0.010 (4)−0.023 (3)
C11'0.053 (5)0.065 (8)0.040 (6)−0.015 (4)0.011 (4)−0.015 (5)
C12'0.048 (5)0.076 (6)0.051 (5)−0.015 (4)0.023 (4)0.007 (4)
C13'0.063 (5)0.049 (5)0.035 (4)0.002 (4)0.016 (3)0.010 (3)
Cl1'0.065 (3)0.099 (3)0.096 (5)0.0217 (19)0.016 (3)−0.007 (3)
O1—N11.396 (7)O1'—N1'1.400 (7)
O1—H10.8200O1'—H1'0.8200
N1—C21.292 (8)N1'—C2'1.290 (9)
C1—C21.497 (7)C1'—C2'1.496 (8)
C1—C61.520 (12)C1'—C6'1.520 (13)
C1—H1A0.9700C1'—H1'10.9700
C1—H1B0.9700C1'—H1'20.9700
C2—C31.448 (7)C2'—C3'1.449 (8)
C3—C41.324 (7)C3'—C4'1.324 (8)
C3—H30.9300C3'—H3'0.9300
C4—C71.524 (6)C4'—C7'1.525 (7)
C4—C51.532 (10)C4'—C5'1.533 (10)
C5—C61.456 (10)C5'—C6'1.454 (10)
C5—H5A0.9700C5'—H5'10.9700
C5—H5B0.9700C5'—H5'20.9700
C6—C81.535 (6)C6'—C8'1.525 (6)
C6—H60.9800C6'—H6'0.9800
C7—H7A0.9600C7'—H7'10.9600
C7—H7B0.9600C7'—H7'20.9600
C7—H7C0.9600C7'—H7'30.9600
C8—C91.3900C8'—C13'1.3900
C8—C131.3900C8'—C9'1.3900
C9—C101.3900C9'—C10'1.3900
C9—H90.9300C9'—H9'0.9300
C10—C111.3900C10'—C11'1.3900
C10—Cl11.687 (5)C10'—Cl1'1.710 (6)
C11—C121.3900C11'—C12'1.3900
C11—H110.9300C11'—H11'0.9300
C12—C131.3900C12'—C13'1.3900
C12—H120.9300C12'—H12'0.9300
C13—H130.9300C13'—H13'0.9300
N1—O1—H1109.5N1'—O1'—H1'109.5
C2—N1—O1108.8 (13)C2'—N1'—O1'118.0 (16)
C2—C1—C6112.9 (9)C2'—C1'—C6'113.0 (10)
C2—C1—H1A109.0C2'—C1'—H1'1109.0
C6—C1—H1A109.0C6'—C1'—H1'1109.0
C2—C1—H1B109.0C2'—C1'—H1'2109.0
C6—C1—H1B109.0C6'—C1'—H1'2109.0
H1A—C1—H1B107.8H1'1—C1'—H1'2107.8
N1—C2—C3115.9 (11)N1'—C2'—C3'118.6 (13)
N1—C2—C1126.9 (11)N1'—C2'—C1'120.7 (13)
C3—C2—C1117.1 (7)C3'—C2'—C1'120.0 (9)
C4—C3—C2123.5 (9)C4'—C3'—C2'123.1 (10)
C4—C3—H3118.2C4'—C3'—H3'118.5
C2—C3—H3118.2C2'—C3'—H3'118.5
C3—C4—C7124.2 (11)C3'—C4'—C7'121.2 (13)
C3—C4—C5123.7 (9)C3'—C4'—C5'114.8 (10)
C7—C4—C5111.8 (7)C7'—C4'—C5'123.4 (10)
C6—C5—C4111.8 (9)C6'—C5'—C4'123.9 (11)
C6—C5—H5A109.3C6'—C5'—H5'1106.4
C4—C5—H5A109.3C4'—C5'—H5'1106.4
C6—C5—H5B109.3C6'—C5'—H5'2106.4
C4—C5—H5B109.3C4'—C5'—H5'2106.4
H5A—C5—H5B107.9H5'1—C5'—H5'2106.4
C5—C6—C1121.1 (10)C5'—C6'—C1'109.9 (12)
C5—C6—C8113.3 (8)C5'—C6'—C8'117.3 (9)
C1—C6—C8110.5 (7)C1'—C6'—C8'113.4 (7)
C5—C6—H6103.2C5'—C6'—H6'105.0
C1—C6—H6103.2C1'—C6'—H6'105.0
C8—C6—H6103.2C8'—C6'—H6'105.0
C4—C7—H7A109.5C4'—C7'—H7'1109.5
C4—C7—H7B109.5C4'—C7'—H7'2109.5
H7A—C7—H7B109.5H7'1—C7'—H7'2109.5
C4—C7—H7C109.5C4'—C7'—H7'3109.5
H7A—C7—H7C109.5H7'1—C7'—H7'3109.5
H7B—C7—H7C109.5H7'2—C7'—H7'3109.5
C9—C8—C13120.0C13'—C8'—C9'120.0
C9—C8—C6122.9 (4)C13'—C8'—C6'121.7 (3)
C13—C8—C6117.1 (4)C9'—C8'—C6'118.3 (3)
C8—C9—C10120.0C10'—C9'—C8'120.0
C8—C9—H9120.0C10'—C9'—H9'120.0
C10—C9—H9120.0C8'—C9'—H9'120.0
C9—C10—C11120.0C11'—C10'—C9'120.0
C9—C10—Cl1115.3 (3)C11'—C10'—Cl1'115.5 (4)
C11—C10—Cl1124.6 (3)C9'—C10'—Cl1'124.4 (4)
C12—C11—C10120.0C10'—C11'—C12'120.0
C12—C11—H11120.0C10'—C11'—H11'120.0
C10—C11—H11120.0C12'—C11'—H11'120.0
C11—C12—C13120.0C13'—C12'—C11'120.0
C11—C12—H12120.0C13'—C12'—H12'120.0
C13—C12—H12120.0C11'—C12'—H12'120.0
C12—C13—C8120.0C12'—C13'—C8'120.0
C12—C13—H13120.0C12'—C13'—H13'120.0
C8—C13—H13120.0C8'—C13'—H13'120.0
O1—N1—C2—C3−177.7 (17)O1'—N1'—C2'—C3'177 (2)
O1—N1—C2—C17 (3)O1'—N1'—C2'—C1'−13 (4)
C6—C1—C2—N1149 (2)C6'—C1'—C2'—N1'−140 (2)
C6—C1—C2—C3−27 (2)C6'—C1'—C2'—C3'30 (3)
N1—C2—C3—C4−171.4 (18)N1'—C2'—C3'—C4'172 (2)
C1—C2—C3—C45 (3)C1'—C2'—C3'—C4'2 (3)
C2—C3—C4—C7−176.5 (15)C2'—C3'—C4'—C7'171.5 (18)
C2—C3—C4—C510 (3)C2'—C3'—C4'—C5'−16 (3)
C3—C4—C5—C60 (3)C3'—C4'—C5'—C6'−2 (4)
C7—C4—C5—C6−174.3 (14)C7'—C4'—C5'—C6'170.0 (19)
C4—C5—C6—C1−25 (3)C4'—C5'—C6'—C1'32 (3)
C4—C5—C6—C8−159.4 (14)C4'—C5'—C6'—C8'163 (2)
C2—C1—C6—C538 (2)C2'—C1'—C6'—C5'−43 (2)
C2—C1—C6—C8174.1 (12)C2'—C1'—C6'—C8'−176.8 (15)
C5—C6—C8—C9−108.1 (13)C5'—C6'—C8'—C13'111.6 (16)
C1—C6—C8—C9112.4 (10)C1'—C6'—C8'—C13'−118.5 (12)
C5—C6—C8—C1371.8 (13)C5'—C6'—C8'—C9'−70.0 (16)
C1—C6—C8—C13−67.7 (10)C1'—C6'—C8'—C9'59.9 (12)
C13—C8—C9—C100.0C13'—C8'—C9'—C10'0.0
C6—C8—C9—C10179.9 (3)C6'—C8'—C9'—C10'−178.4 (4)
C8—C9—C10—C110.0C8'—C9'—C10'—C11'0.0
C8—C9—C10—Cl1−177.8 (5)C8'—C9'—C10'—Cl1'175.1 (6)
C9—C10—C11—C120.0C9'—C10'—C11'—C12'0.0
Cl1—C10—C11—C12177.6 (6)Cl1'—C10'—C11'—C12'−175.5 (6)
C10—C11—C12—C130.0C10'—C11'—C12'—C13'0.0
C11—C12—C13—C80.0C11'—C12'—C13'—C8'0.0
C9—C8—C13—C120.0C9'—C8'—C13'—C12'0.0
C6—C8—C13—C12−179.9 (3)C6'—C8'—C13'—C12'178.4 (4)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Chloro-acetyl-2,6-bis-(2-chloro-phen-yl)-3,5-dimethyl-piperidin-4-one oxime.

Authors:  K Ravichandran; P Ramesh; M Rani; S Kabilan; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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