Literature DB >> 23476606

Ethyl 2-amino-4-(4-bromo-phen-yl)-6-meth-oxy-4H-benzo[h]chromene-3-carboxyl-ate.

Ahmed M El-Agrody1, Ahmed M Fouda, Mohamed A Al-Omar, Abd El-Galil E Amr, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C23H20BrNO4, the pyran ring has a flattened boat conformation with the O and methine C atoms lying to one side of the plane [0.160 (5) and 0.256 (6) Å, respectively] defined by the remaining atoms. Nevertheless, the 4H-benzo[h]chromene ring system approximates a plane (r.m.s. deviation = 0.116 Å) with the bromo-benzene ring almost perpendicular [dihedral angle = 83.27 (16)°] and the ester group coplanar [C-C-C-O = 3.4 (5)°]; the meth-oxy substituent is also coplanar [C-O-C-C = 174.5 (3)°]. In addition to an intra-molecular N-H⋯O(ester carbon-yl) hydrogen bond, the ester carbonyl O atom also forms an inter-molecular N-H⋯O hydrogen bond with the second amine H atom, generating a zigzag supra-molecular chain along the c axis in the crystal packing. The chains are linked into layers in the bc plane by N-H⋯Br hydrogen bonds, and these layers are consolidated into a three-dimensional architecture by C-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 23476606      PMCID: PMC3588478          DOI: 10.1107/S160053681300490X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the pharmaceutical activity of 4H-chromene and its derivatives, see: Abd-El-Aziz et al. (2004 ▶, 2007 ▶); Kemnitzer et al. (2007 ▶); Alvey et al. (2009 ▶). For the isostructural 4-fluoro analogue, see: El-Agrody et al. (2012 ▶).

Experimental

Crystal data

C23H20BrNO4 M = 454.31 Monoclinic, a = 13.1543 (14) Å b = 16.8110 (18) Å c = 9.3672 (12) Å β = 96.628 (10)° V = 2057.6 (4) Å3 Z = 4 Mo Kα radiation μ = 2.03 mm−1 T = 295 K 0.30 × 0.20 × 0.03 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.828, T max = 1.000 12041 measured reflections 4740 independent reflections 2533 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.164 S = 1.02 4740 reflections 270 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.91 e Å−3 Δρmin = −0.90 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681300490X/hg5295sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300490X/hg5295Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681300490X/hg5295Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20BrNO4F(000) = 928
Mr = 454.31Dx = 1.467 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1932 reflections
a = 13.1543 (14) Åθ = 2.8–27.5°
b = 16.8110 (18) ŵ = 2.03 mm1
c = 9.3672 (12) ÅT = 295 K
β = 96.628 (10)°Plate, light-orange
V = 2057.6 (4) Å30.30 × 0.20 × 0.03 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector4740 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2533 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.054
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.9°
ω scanh = −16→17
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −21→21
Tmin = 0.828, Tmax = 1.000l = −7→12
12041 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0575P)2 + 0.7996P] where P = (Fo2 + 2Fc2)/3
4740 reflections(Δ/σ)max = 0.001
270 parametersΔρmax = 0.91 e Å3
2 restraintsΔρmin = −0.90 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.04105 (4)0.70821 (4)0.50571 (7)0.0900 (3)
O10.30720 (18)0.30429 (15)0.7238 (3)0.0464 (7)
O20.1283 (2)0.34197 (17)1.0635 (3)0.0539 (7)
O30.1749 (2)0.47024 (17)1.0602 (3)0.0558 (7)
O40.6285 (2)0.50690 (18)0.6512 (3)0.0634 (8)
N10.1869 (3)0.2527 (2)0.8418 (4)0.0538 (9)
H20.138 (3)0.260 (4)0.897 (5)0.11 (2)*
H10.182 (3)0.2203 (18)0.768 (3)0.044 (12)*
C10.3874 (3)0.3580 (2)0.7136 (4)0.0397 (9)
C20.4654 (3)0.3302 (2)0.6337 (4)0.0399 (9)
C30.4637 (3)0.2537 (2)0.5709 (4)0.0447 (9)
H30.40950.21940.58070.054*
C40.5416 (3)0.2300 (3)0.4959 (4)0.0533 (11)
H40.54040.17920.45620.064*
C50.6228 (3)0.2812 (3)0.4783 (5)0.0613 (12)
H50.67520.26440.42670.074*
C60.6260 (3)0.3553 (3)0.5359 (5)0.0579 (12)
H60.68020.38890.52230.069*
C70.5480 (3)0.3824 (2)0.6167 (4)0.0436 (9)
C80.5483 (3)0.4599 (2)0.6797 (4)0.0464 (10)
C90.4730 (3)0.4824 (2)0.7582 (4)0.0463 (10)
H90.47560.53250.80070.056*
C100.3900 (3)0.4308 (2)0.7768 (4)0.0409 (9)
C110.3054 (3)0.4576 (2)0.8616 (4)0.0428 (9)
H110.33690.48290.95010.051*
C120.2446 (3)0.3864 (2)0.9034 (4)0.0390 (9)
C130.2453 (3)0.3168 (2)0.8286 (4)0.0394 (9)
C140.1773 (3)0.3946 (2)1.0137 (4)0.0428 (9)
C150.1070 (4)0.4882 (3)1.1673 (5)0.0741 (14)
H15A0.13430.46691.26010.089*
H15B0.04000.46521.14010.089*
C160.0999 (5)0.5766 (3)1.1742 (6)0.097 (2)
H16A0.05500.59131.24350.146*
H16B0.07360.59681.08140.146*
H16C0.16670.59841.20200.146*
C170.2379 (3)0.5190 (2)0.7770 (4)0.0426 (9)
C180.1791 (3)0.4979 (2)0.6511 (5)0.0516 (10)
H180.17890.44540.61990.062*
C190.1203 (3)0.5538 (3)0.5709 (5)0.0582 (12)
H190.08130.53920.48580.070*
C200.1202 (3)0.6312 (3)0.6184 (5)0.0568 (12)
C210.1771 (4)0.6536 (3)0.7419 (5)0.0659 (13)
H210.17640.70610.77310.079*
C220.2362 (3)0.5972 (3)0.8208 (5)0.0588 (12)
H220.27560.61240.90520.071*
C230.6286 (3)0.5869 (3)0.6996 (5)0.0624 (12)
H23A0.68790.61380.67250.094*
H23B0.63020.58780.80230.094*
H23C0.56800.61330.65660.094*
U11U22U33U12U13U23
Br10.0945 (4)0.0850 (5)0.0981 (5)0.0486 (3)0.0437 (3)0.0394 (3)
O10.0453 (14)0.0431 (16)0.0537 (18)−0.0112 (12)0.0179 (12)−0.0067 (13)
O20.0601 (17)0.0524 (19)0.0521 (18)−0.0043 (14)0.0187 (13)0.0031 (14)
O30.0770 (19)0.0445 (17)0.0495 (18)0.0043 (14)0.0229 (14)−0.0045 (14)
O40.0519 (17)0.058 (2)0.083 (2)−0.0210 (15)0.0179 (14)−0.0057 (17)
N10.058 (2)0.046 (2)0.062 (3)−0.0103 (19)0.0252 (19)−0.0082 (19)
C10.0367 (19)0.042 (2)0.041 (2)−0.0061 (17)0.0063 (16)0.0040 (18)
C20.0375 (19)0.042 (2)0.040 (2)0.0000 (17)0.0032 (15)0.0032 (18)
C30.043 (2)0.043 (2)0.047 (2)−0.0030 (19)0.0062 (17)−0.0026 (19)
C40.059 (3)0.050 (3)0.052 (3)0.004 (2)0.012 (2)−0.006 (2)
C50.049 (3)0.069 (3)0.068 (3)0.001 (2)0.019 (2)−0.008 (3)
C60.046 (2)0.063 (3)0.068 (3)−0.007 (2)0.018 (2)−0.002 (2)
C70.036 (2)0.047 (2)0.048 (2)−0.0049 (18)0.0054 (16)0.0043 (19)
C80.041 (2)0.047 (2)0.051 (3)−0.0103 (18)0.0025 (17)0.001 (2)
C90.045 (2)0.040 (2)0.054 (3)−0.0053 (18)0.0043 (18)−0.0024 (19)
C100.039 (2)0.041 (2)0.041 (2)−0.0011 (17)0.0025 (16)0.0002 (18)
C110.049 (2)0.041 (2)0.039 (2)−0.0021 (18)0.0034 (16)−0.0040 (18)
C120.043 (2)0.036 (2)0.039 (2)0.0007 (17)0.0069 (16)0.0008 (17)
C130.0392 (19)0.037 (2)0.043 (2)−0.0039 (17)0.0095 (16)0.0037 (18)
C140.044 (2)0.044 (2)0.040 (2)0.0026 (19)0.0023 (17)0.0041 (19)
C150.102 (4)0.071 (4)0.055 (3)0.018 (3)0.029 (3)−0.008 (3)
C160.151 (6)0.073 (4)0.073 (4)0.044 (4)0.037 (4)−0.005 (3)
C170.046 (2)0.035 (2)0.048 (2)−0.0047 (17)0.0116 (17)−0.0024 (18)
C180.060 (2)0.038 (2)0.056 (3)0.001 (2)0.007 (2)0.001 (2)
C190.056 (3)0.064 (3)0.054 (3)0.002 (2)0.007 (2)0.010 (2)
C200.056 (3)0.050 (3)0.070 (3)0.018 (2)0.031 (2)0.016 (2)
C210.093 (3)0.038 (3)0.072 (3)0.014 (2)0.032 (3)0.000 (2)
C220.077 (3)0.042 (3)0.058 (3)0.000 (2)0.012 (2)−0.008 (2)
C230.061 (3)0.050 (3)0.074 (3)−0.016 (2)−0.001 (2)0.008 (2)
Br1—C201.903 (4)C9—H90.9300
O1—C131.362 (4)C10—C111.508 (5)
O1—C11.400 (4)C11—C121.517 (5)
O2—C141.218 (4)C11—C171.524 (5)
O3—C141.346 (5)C11—H110.9800
O3—C151.450 (5)C12—C131.364 (5)
O4—C81.369 (4)C12—C141.442 (5)
O4—C231.419 (5)C15—C161.489 (7)
N1—C131.338 (5)C15—H15A0.9700
N1—H20.876 (10)C15—H15B0.9700
N1—H10.878 (10)C16—H16A0.9600
C1—C101.359 (5)C16—H16B0.9600
C1—C21.417 (5)C16—H16C0.9600
C2—C31.413 (5)C17—C221.378 (5)
C2—C71.420 (5)C17—C181.380 (5)
C3—C41.366 (5)C18—C191.382 (6)
C3—H30.9300C18—H180.9300
C4—C51.397 (6)C19—C201.375 (6)
C4—H40.9300C19—H190.9300
C5—C61.355 (6)C20—C211.356 (6)
C5—H50.9300C21—C221.384 (6)
C6—C71.418 (6)C21—H210.9300
C6—H60.9300C22—H220.9300
C7—C81.430 (6)C23—H23A0.9600
C8—C91.354 (6)C23—H23B0.9600
C9—C101.421 (5)C23—H23C0.9600
C13—O1—C1117.9 (3)C14—C12—C11119.7 (3)
C14—O3—C15117.4 (3)N1—C13—O1109.9 (3)
C8—O4—C23117.3 (3)N1—C13—C12127.2 (4)
C13—N1—H2114 (4)O1—C13—C12122.9 (3)
C13—N1—H1115 (3)O2—C14—O3121.9 (4)
H2—N1—H1125 (5)O2—C14—C12126.8 (4)
C10—C1—O1122.1 (3)O3—C14—C12111.2 (4)
C10—C1—C2123.0 (3)O3—C15—C16106.5 (4)
O1—C1—C2114.9 (3)O3—C15—H15A110.4
C1—C2—C3122.9 (3)C16—C15—H15A110.4
C1—C2—C7117.8 (3)O3—C15—H15B110.4
C3—C2—C7119.4 (3)C16—C15—H15B110.4
C4—C3—C2120.2 (4)H15A—C15—H15B108.6
C4—C3—H3119.9C15—C16—H16A109.5
C2—C3—H3119.9C15—C16—H16B109.5
C3—C4—C5120.6 (4)H16A—C16—H16B109.5
C3—C4—H4119.7C15—C16—H16C109.5
C5—C4—H4119.7H16A—C16—H16C109.5
C6—C5—C4120.5 (4)H16B—C16—H16C109.5
C6—C5—H5119.7C22—C17—C18118.3 (4)
C4—C5—H5119.7C22—C17—C11121.3 (4)
C5—C6—C7121.1 (4)C18—C17—C11120.4 (3)
C5—C6—H6119.4C19—C18—C17120.8 (4)
C7—C6—H6119.4C19—C18—H18119.6
C6—C7—C2118.1 (4)C17—C18—H18119.6
C6—C7—C8123.1 (4)C18—C19—C20119.3 (4)
C2—C7—C8118.8 (3)C18—C19—H19120.4
C9—C8—O4125.0 (4)C20—C19—H19120.4
C9—C8—C7120.8 (4)C21—C20—C19121.2 (4)
O4—C8—C7114.3 (3)C21—C20—Br1119.8 (4)
C8—C9—C10121.1 (4)C19—C20—Br1119.0 (4)
C8—C9—H9119.5C20—C21—C22119.0 (4)
C10—C9—H9119.5C20—C21—H21120.5
C1—C10—C9118.5 (4)C22—C21—H21120.5
C1—C10—C11121.0 (3)C17—C22—C21121.4 (4)
C9—C10—C11120.4 (3)C17—C22—H22119.3
C10—C11—C12110.1 (3)C21—C22—H22119.3
C10—C11—C17110.4 (3)O4—C23—H23A109.5
C12—C11—C17112.1 (3)O4—C23—H23B109.5
C10—C11—H11108.0H23A—C23—H23B109.5
C12—C11—H11108.0O4—C23—H23C109.5
C17—C11—H11108.0H23A—C23—H23C109.5
C13—C12—C14119.5 (4)H23B—C23—H23C109.5
C13—C12—C11120.6 (3)
C13—O1—C1—C10−17.1 (5)C1—C10—C11—C17−105.9 (4)
C13—O1—C1—C2162.4 (3)C9—C10—C11—C1772.4 (4)
C10—C1—C2—C3178.4 (3)C10—C11—C12—C13−21.7 (5)
O1—C1—C2—C3−1.0 (5)C17—C11—C12—C13101.7 (4)
C10—C1—C2—C7−1.7 (5)C10—C11—C12—C14164.5 (3)
O1—C1—C2—C7178.8 (3)C17—C11—C12—C14−72.1 (4)
C1—C2—C3—C4−179.5 (4)C1—O1—C13—N1−167.7 (3)
C7—C2—C3—C40.7 (5)C1—O1—C13—C1213.7 (5)
C2—C3—C4—C5−1.0 (6)C14—C12—C13—N12.2 (6)
C3—C4—C5—C60.2 (7)C11—C12—C13—N1−171.6 (4)
C4—C5—C6—C70.8 (7)C14—C12—C13—O1−179.5 (3)
C5—C6—C7—C2−1.0 (6)C11—C12—C13—O16.8 (5)
C5—C6—C7—C8179.8 (4)C15—O3—C14—O2−3.3 (6)
C1—C2—C7—C6−179.5 (4)C15—O3—C14—C12177.5 (3)
C3—C2—C7—C60.3 (5)C13—C12—C14—O210.4 (6)
C1—C2—C7—C8−0.4 (5)C11—C12—C14—O2−175.7 (3)
C3—C2—C7—C8179.5 (3)C13—C12—C14—O3−170.4 (3)
C23—O4—C8—C9−4.4 (6)C11—C12—C14—O33.4 (5)
C23—O4—C8—C7174.5 (3)C14—O3—C15—C16−166.9 (4)
C6—C7—C8—C9−178.7 (4)C10—C11—C17—C22−111.9 (4)
C2—C7—C8—C92.1 (6)C12—C11—C17—C22125.0 (4)
C6—C7—C8—O42.2 (6)C10—C11—C17—C1866.0 (5)
C2—C7—C8—O4−176.9 (3)C12—C11—C17—C18−57.2 (5)
O4—C8—C9—C10177.0 (3)C22—C17—C18—C190.2 (6)
C7—C8—C9—C10−1.9 (6)C11—C17—C18—C19−177.7 (4)
O1—C1—C10—C9−178.5 (3)C17—C18—C19—C20−0.5 (6)
C2—C1—C10—C92.1 (5)C18—C19—C20—C210.4 (7)
O1—C1—C10—C11−0.2 (5)C18—C19—C20—Br1178.9 (3)
C2—C1—C10—C11−179.6 (3)C19—C20—C21—C220.1 (7)
C8—C9—C10—C1−0.2 (6)Br1—C20—C21—C22−178.4 (3)
C8—C9—C10—C11−178.5 (4)C18—C17—C22—C210.2 (7)
C1—C10—C11—C1218.4 (5)C11—C17—C22—C21178.1 (4)
C9—C10—C11—C12−163.3 (3)C20—C21—C22—C17−0.4 (7)
D—H···AD—HH···AD···AD—H···A
N1—H2···O20.88 (1)2.09 (5)2.744 (5)131 (5)
N1—H1···O2i0.88 (1)2.22 (2)3.075 (5)163 (3)
N1—H2···Br1ii0.88 (4)2.76 (4)3.547 (4)149 (5)
C4—H4···Cg1i0.932.903.673 (5)142
C6—H6···Cg2iii0.932.983.743 (5)140
C23—H23C···Cg3iii0.962.703.593 (5)154
Table 1

Hydrogen-bond geometry (Å, °)

Cg1, Cg2 and Cg3 are the centroids of the C1,C2,C7–C10, C17–C22 and C2–C7 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H2⋯O20.88 (1)2.09 (5)2.744 (5)131 (5)
N1—H1⋯O2i 0.88 (1)2.22 (2)3.075 (5)163 (3)
N1—H2⋯Br1ii 0.88 (4)2.76 (4)3.547 (4)149 (5)
C4—H4⋯Cg1i 0.932.903.673 (5)142
C6—H6⋯Cg2iii 0.932.983.743 (5)140
C23—H23CCg3iii 0.962.703.593 (5)154

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Luke Alvey; Soizic Prado; Brigitte Saint-Joanis; Sylvie Michel; Michel Koch; Stewart T Cole; François Tillequin; Yves L Janin
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3.  Discovery of 4-aryl-4H-chromenes as a new series of apoptosis inducers using a cell- and caspase-based high-throughput screening assay. 3. Structure-activity relationships of fused rings at the 7,8-positions.

Authors:  William Kemnitzer; John Drewe; Songchun Jiang; Hong Zhang; Jianghong Zhao; Candace Crogan-Grundy; Lifen Xu; Serge Lamothe; Henriette Gourdeau; Réal Denis; Ben Tseng; Shailaja Kasibhatla; Sui Xiong Cai
Journal:  J Med Chem       Date:  2007-05-11       Impact factor: 7.446

4.  Ethyl 2-amino-4-(4-fluoro-phen-yl)-6-meth-oxy-4H-benzo[h]chromene-3-carboxyl-ate.

Authors:  Ahmed M El-Agrody; Mohamed A Al-Omar; Abdel-Galil E Amr; Tze Shyang Chia; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  4 in total

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