Literature DB >> 23476593

2-Amino-7,7-dimethyl-5-oxo-4-[3-(trifluoro-meth-yl)phen-yl]-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile.

Rajni Kant1, Vivek K Gupta, Kamini Kapoor, D R Patil, D R Chandam, Madhukar B Deshmukh.   

Abstract

In the title mol-ecule, C19H17F3N2O2, the fused cyclo-hexene and pyran rings adopt sofa and flattened boat conformations, respectively. The four essentially planar atoms of the pyran ring [maximum deviation = 0.008 (2) Å] form a dihedral angle of 88.13 (9)° with the benzene ring. The F atoms of the trifluoro-methyl group were refined as disordered over three sets of sites in a 0.507 (7):0.330 (7):0.163 (3) ratio. In the crystal, mol-ecules are connected into inversion dimers via pairs of N-H⋯N hydrogen bonds and these dimers are further linked by N-H⋯O hydrogen bonds into a two-dimensional network parallel to (100).

Entities:  

Year:  2013        PMID: 23476593      PMCID: PMC3588544          DOI: 10.1107/S1600536813004522

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4H-pyran derivatives, see: Bhattacharyya et al.(2012 ▶); Khaksar et al. (2012 ▶); Fotouhi et al. (2007 ▶). For related structures, see: Wang (2011 ▶); Anthal et al. (2012 ▶); Kant et al. (2013 ▶). For ring conformations, see: Duax & Norton (1975 ▶).

Experimental

Crystal data

C19H17F3N2O2 M = 362.35 Monoclinic, a = 23.7543 (6) Å b = 9.3871 (2) Å c = 15.8857 (4) Å β = 94.704 (2)° V = 3530.33 (15) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.3 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.766, T max = 1.000 40937 measured reflections 3467 independent reflections 2538 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.126 S = 1.03 3467 reflections 258 parameters 10 restraints H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813004522/lh5585sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004522/lh5585Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004522/lh5585Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H17F3N2O2F(000) = 1504
Mr = 362.35Dx = 1.363 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 18267 reflections
a = 23.7543 (6) Åθ = 3.4–29.1°
b = 9.3871 (2) ŵ = 0.11 mm1
c = 15.8857 (4) ÅT = 293 K
β = 94.704 (2)°Block, colorless
V = 3530.33 (15) Å30.3 × 0.2 × 0.2 mm
Z = 8
Oxford Diffraction Xcalibur Sapphire3 diffractometer3467 independent reflections
Radiation source: fine-focus sealed tube2538 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.065
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scansh = −29→29
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −11→11
Tmin = 0.766, Tmax = 1.000l = −19→19
40937 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0389P)2 + 5.1587P] where P = (Fo2 + 2Fc2)/3
3467 reflections(Δ/σ)max = 0.001
258 parametersΔρmax = 0.26 e Å3
10 restraintsΔρmin = −0.32 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27-08-2010 CrysAlis171 .NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.08902 (7)0.55303 (15)1.02901 (8)0.0401 (4)
C20.06233 (9)0.6806 (2)1.01297 (12)0.0324 (5)
O20.06995 (8)0.41341 (18)0.74350 (9)0.0506 (5)
C30.04766 (9)0.7238 (2)0.93258 (12)0.0308 (5)
C40.06583 (9)0.6445 (2)0.85626 (12)0.0319 (5)
H40.03350.64050.81380.038*
C4A0.08096 (9)0.4945 (2)0.88253 (12)0.0313 (5)
C50.08182 (9)0.3842 (2)0.81766 (13)0.0358 (5)
C60.09581 (11)0.2348 (2)0.84666 (15)0.0431 (6)
H6A0.11170.18360.80110.052*
H6B0.06120.18690.85880.052*
C70.13766 (10)0.2287 (2)0.92539 (14)0.0394 (5)
C80.11327 (11)0.3177 (2)0.99442 (14)0.0402 (6)
H8A0.08210.26631.01610.048*
H8B0.14210.33091.04070.048*
C8A0.09300 (9)0.4593 (2)0.96338 (13)0.0319 (5)
C90.11372 (10)0.7223 (2)0.81771 (12)0.0337 (5)
C100.16874 (10)0.7180 (2)0.85477 (13)0.0377 (5)
H100.17720.66170.90230.045*
C110.21092 (11)0.7965 (3)0.82186 (15)0.0454 (6)
C120.19901 (13)0.8810 (3)0.75148 (17)0.0575 (7)
H120.22750.93350.72920.069*
C130.14458 (14)0.8865 (3)0.71472 (16)0.0636 (8)
H130.13600.94400.66770.076*
C140.10264 (11)0.8071 (3)0.74738 (14)0.0498 (7)
H140.06610.81070.72140.060*
C150.26941 (13)0.7941 (4)0.8631 (2)0.0643 (8)
C190.01734 (9)0.8518 (2)0.91848 (12)0.0328 (5)
N20−0.00772 (9)0.9545 (2)0.90387 (12)0.0495 (6)
N210.05451 (9)0.7470 (2)1.08480 (11)0.0446 (5)
H21A0.03810.82881.08390.054*
H21B0.06580.70831.13230.054*
C220.19433 (11)0.2886 (3)0.90370 (18)0.0583 (7)
H22A0.18870.38050.87790.088*
H22B0.21090.22540.86520.088*
H22C0.21900.29750.95440.088*
C230.14521 (13)0.0752 (3)0.95659 (17)0.0592 (8)
H23A0.15800.01710.91220.089*
H23B0.10980.03950.97270.089*
H23C0.17260.07271.00440.089*
F1A0.2811 (5)0.8968 (12)0.9208 (6)0.089 (2)0.507 (7)
F2A0.2806 (3)0.6766 (7)0.9151 (5)0.0813 (17)0.507 (7)
F3A0.3113 (2)0.7874 (11)0.8116 (4)0.091 (2)0.507 (7)
F1B0.2694 (8)0.861 (2)0.9364 (9)0.089 (2)0.330 (7)
F2B0.2877 (5)0.6587 (9)0.8792 (8)0.0813 (17)0.330 (7)
F3B0.3049 (4)0.8668 (14)0.8182 (7)0.091 (2)0.330 (7)
F1C0.2904 (6)0.9254 (11)0.8551 (10)0.089 (2)0.163 (3)
F2C0.2730 (6)0.7466 (19)0.9427 (6)0.0813 (17)0.163 (3)
F3C0.2982 (6)0.7011 (16)0.8215 (10)0.091 (2)0.163 (3)
U11U22U33U12U13U23
O10.0604 (11)0.0333 (8)0.0262 (7)0.0141 (7)0.0006 (7)−0.0023 (6)
C20.0373 (13)0.0274 (10)0.0326 (11)0.0049 (9)0.0042 (9)−0.0011 (9)
O20.0679 (12)0.0506 (10)0.0325 (9)0.0070 (9)−0.0012 (8)−0.0119 (8)
C30.0333 (12)0.0291 (10)0.0299 (11)0.0049 (9)0.0027 (8)−0.0011 (8)
C40.0365 (13)0.0338 (11)0.0246 (10)0.0056 (9)−0.0024 (8)−0.0015 (8)
C4A0.0303 (12)0.0325 (11)0.0311 (11)0.0007 (9)0.0023 (8)−0.0036 (9)
C50.0316 (12)0.0403 (12)0.0358 (12)−0.0004 (10)0.0042 (9)−0.0079 (10)
C60.0495 (15)0.0323 (12)0.0480 (13)−0.0001 (11)0.0073 (11)−0.0114 (10)
C70.0436 (14)0.0307 (11)0.0450 (13)0.0061 (10)0.0101 (10)−0.0006 (10)
C80.0524 (15)0.0311 (11)0.0377 (12)0.0061 (11)0.0075 (10)0.0026 (10)
C8A0.0344 (13)0.0288 (11)0.0328 (11)0.0009 (9)0.0055 (9)−0.0025 (9)
C90.0438 (14)0.0323 (11)0.0255 (10)0.0066 (10)0.0057 (9)−0.0034 (9)
C100.0438 (14)0.0376 (12)0.0322 (11)0.0059 (10)0.0058 (10)0.0014 (10)
C110.0484 (15)0.0464 (14)0.0431 (13)0.0029 (12)0.0151 (11)−0.0079 (11)
C120.063 (2)0.0597 (17)0.0531 (16)−0.0032 (14)0.0267 (14)0.0068 (13)
C130.078 (2)0.0712 (19)0.0429 (15)0.0045 (16)0.0142 (14)0.0259 (14)
C140.0539 (17)0.0607 (16)0.0345 (13)0.0068 (13)0.0022 (11)0.0116 (12)
C150.0492 (18)0.077 (2)0.0679 (19)−0.0027 (16)0.0137 (14)0.0023 (17)
C190.0381 (13)0.0354 (12)0.0248 (10)0.0012 (10)0.0023 (9)−0.0033 (9)
N200.0636 (15)0.0412 (12)0.0423 (11)0.0166 (11)−0.0040 (10)−0.0042 (9)
N210.0708 (15)0.0362 (10)0.0270 (9)0.0175 (10)0.0058 (9)−0.0005 (8)
C220.0380 (15)0.0703 (18)0.0675 (17)0.0098 (14)0.0094 (12)0.0119 (15)
C230.080 (2)0.0344 (13)0.0647 (17)0.0141 (13)0.0142 (15)−0.0008 (12)
F1A0.061 (5)0.119 (6)0.085 (3)−0.017 (3)−0.006 (3)−0.031 (5)
F2A0.057 (3)0.098 (3)0.089 (5)0.029 (2)0.005 (3)−0.004 (3)
F3A0.0386 (17)0.154 (7)0.0855 (18)0.008 (3)0.0329 (12)0.012 (4)
F1B0.061 (5)0.119 (6)0.085 (3)−0.017 (3)−0.006 (3)−0.031 (5)
F2B0.057 (3)0.098 (3)0.089 (5)0.029 (2)0.005 (3)−0.004 (3)
F3B0.0386 (17)0.154 (7)0.0855 (18)0.008 (3)0.0329 (12)0.012 (4)
F1C0.061 (5)0.119 (6)0.085 (3)−0.017 (3)−0.006 (3)−0.031 (5)
F2C0.057 (3)0.098 (3)0.089 (5)0.029 (2)0.005 (3)−0.004 (3)
F3C0.0386 (17)0.154 (7)0.0855 (18)0.008 (3)0.0329 (12)0.012 (4)
O1—C21.369 (2)C11—C121.381 (4)
O1—C8A1.373 (2)C11—C151.487 (4)
C2—N211.327 (3)C12—C131.375 (4)
C2—C31.358 (3)C12—H120.9300
O2—C51.220 (3)C13—C141.379 (4)
C3—C191.409 (3)C13—H130.9300
C3—C41.515 (3)C14—H140.9300
C4—C4A1.504 (3)C15—F3C1.320 (8)
C4—C91.522 (3)C15—F1B1.321 (8)
C4—H40.9800C15—F3B1.336 (7)
C4A—C8A1.334 (3)C15—F2C1.337 (8)
C4A—C51.462 (3)C15—F3A1.339 (5)
C5—C61.505 (3)C15—F1C1.340 (8)
C6—C71.534 (3)C15—F1A1.344 (5)
C6—H6A0.9700C15—F2B1.360 (7)
C6—H6B0.9700C15—F2A1.389 (5)
C7—C221.524 (3)C19—N201.147 (3)
C7—C231.529 (3)N21—H21A0.8600
C7—C81.530 (3)N21—H21B0.8600
C8—C8A1.484 (3)C22—H22A0.9600
C8—H8A0.9700C22—H22B0.9600
C8—H8B0.9700C22—H22C0.9600
C9—C141.379 (3)C23—H23A0.9600
C9—C101.389 (3)C23—H23B0.9600
C10—C111.380 (3)C23—H23C0.9600
C10—H100.9300
C2—O1—C8A118.60 (15)C9—C14—C13121.4 (2)
N21—C2—C3128.71 (19)C9—C14—H14119.3
N21—C2—O1110.26 (17)C13—C14—H14119.3
C3—C2—O1121.03 (18)F3C—C15—F1B142.4 (12)
C2—C3—C19119.51 (18)F3C—C15—F3B72.2 (8)
C2—C3—C4122.53 (18)F1B—C15—F3B105.9 (9)
C19—C3—C4117.84 (17)F3C—C15—F2C104.9 (10)
C4A—C4—C3108.37 (16)F3B—C15—F2C132.9 (9)
C4A—C4—C9113.05 (18)F1B—C15—F3A127.9 (8)
C3—C4—C9110.95 (17)F2C—C15—F3A124.6 (7)
C4A—C4—H4108.1F3C—C15—F1C110.4 (10)
C3—C4—H4108.1F1B—C15—F1C71.1 (10)
C9—C4—H4108.1F2C—C15—F1C113.6 (10)
C8A—C4A—C5119.27 (19)F3A—C15—F1C71.6 (8)
C8A—C4A—C4121.77 (18)F3C—C15—F1A136.9 (9)
C5—C4A—C4118.96 (17)F3B—C15—F1A83.9 (6)
O2—C5—C4A120.4 (2)F2C—C15—F1A66.4 (10)
O2—C5—C6122.18 (19)F3A—C15—F1A109.1 (5)
C4A—C5—C6117.37 (18)F1B—C15—F2B107.4 (12)
C5—C6—C7113.39 (18)F3B—C15—F2B111.8 (7)
C5—C6—H6A108.9F2C—C15—F2B61.1 (8)
C7—C6—H6A108.9F3A—C15—F2B80.2 (5)
C5—C6—H6B108.9F1C—C15—F2B139.6 (8)
C7—C6—H6B108.9F1A—C15—F2B119.8 (9)
H6A—C6—H6B107.7F3C—C15—F2A72.0 (8)
C22—C7—C23109.8 (2)F1B—C15—F2A82.3 (11)
C22—C7—C8110.7 (2)F3B—C15—F2A128.6 (6)
C23—C7—C8108.87 (19)F3A—C15—F2A102.1 (4)
C22—C7—C6109.1 (2)F1C—C15—F2A137.0 (7)
C23—C7—C6110.5 (2)F1A—C15—F2A98.3 (7)
C8—C7—C6107.79 (19)F3C—C15—C11107.1 (7)
C8A—C8—C7112.50 (18)F1B—C15—C11108.2 (9)
C8A—C8—H8A109.1F3B—C15—C11111.4 (6)
C7—C8—H8A109.1F2C—C15—C11114.0 (7)
C8A—C8—H8B109.1F3A—C15—C11116.4 (4)
C7—C8—H8B109.1F1C—C15—C11106.6 (6)
H8A—C8—H8B107.8F1A—C15—C11115.0 (6)
C4A—C8A—O1123.33 (18)F2B—C15—C11111.7 (6)
C4A—C8A—C8125.43 (19)F2A—C15—C11113.6 (4)
O1—C8A—C8111.23 (17)N20—C19—C3177.4 (2)
C14—C9—C10118.1 (2)C2—N21—H21A120.0
C14—C9—C4120.2 (2)C2—N21—H21B120.0
C10—C9—C4121.58 (18)H21A—N21—H21B120.0
C11—C10—C9120.7 (2)C7—C22—H22A109.5
C11—C10—H10119.6C7—C22—H22B109.5
C9—C10—H10119.6H22A—C22—H22B109.5
C10—C11—C12120.4 (2)C7—C22—H22C109.5
C10—C11—C15120.4 (2)H22A—C22—H22C109.5
C12—C11—C15119.2 (2)H22B—C22—H22C109.5
C13—C12—C11119.2 (2)C7—C23—H23A109.5
C13—C12—H12120.4C7—C23—H23B109.5
C11—C12—H12120.4H23A—C23—H23B109.5
C12—C13—C14120.2 (2)C7—C23—H23C109.5
C12—C13—H13119.9H23A—C23—H23C109.5
C14—C13—H13119.9H23B—C23—H23C109.5
C8A—O1—C2—N21170.12 (19)C7—C8—C8A—O1−159.98 (19)
C8A—O1—C2—C3−9.9 (3)C4A—C4—C9—C14138.3 (2)
N21—C2—C3—C19−3.7 (4)C3—C4—C9—C14−99.8 (2)
O1—C2—C3—C19176.4 (2)C4A—C4—C9—C10−46.0 (3)
N21—C2—C3—C4172.3 (2)C3—C4—C9—C1076.0 (2)
O1—C2—C3—C4−7.7 (3)C14—C9—C10—C110.0 (3)
C2—C3—C4—C4A21.0 (3)C4—C9—C10—C11−175.90 (19)
C19—C3—C4—C4A−163.03 (19)C9—C10—C11—C120.2 (3)
C2—C3—C4—C9−103.7 (2)C9—C10—C11—C15178.5 (2)
C19—C3—C4—C972.3 (2)C10—C11—C12—C130.3 (4)
C3—C4—C4A—C8A−19.2 (3)C15—C11—C12—C13−178.1 (3)
C9—C4—C4A—C8A104.2 (2)C11—C12—C13—C14−0.8 (4)
C3—C4—C4A—C5160.06 (18)C10—C9—C14—C13−0.5 (4)
C9—C4—C4A—C5−76.5 (2)C4—C9—C14—C13175.4 (2)
C8A—C4A—C5—O2178.7 (2)C12—C13—C14—C90.9 (4)
C4—C4A—C5—O2−0.7 (3)C10—C11—C15—F3C97.7 (9)
C8A—C4A—C5—C60.7 (3)C12—C11—C15—F3C−83.9 (9)
C4—C4A—C5—C6−178.6 (2)C10—C11—C15—F1B−69.1 (11)
O2—C5—C6—C7149.3 (2)C12—C11—C15—F1B109.3 (10)
C4A—C5—C6—C7−32.8 (3)C10—C11—C15—F3B174.8 (7)
C5—C6—C7—C22−65.0 (3)C12—C11—C15—F3B−6.8 (8)
C5—C6—C7—C23174.1 (2)C10—C11—C15—F2C−17.9 (10)
C5—C6—C7—C855.3 (3)C12—C11—C15—F2C160.5 (9)
C22—C7—C8—C8A71.6 (3)C10—C11—C15—F3A138.6 (6)
C23—C7—C8—C8A−167.6 (2)C12—C11—C15—F3A−43.0 (6)
C6—C7—C8—C8A−47.7 (3)C10—C11—C15—F1C−144.1 (8)
C5—C4A—C8A—O1−174.82 (19)C12—C11—C15—F1C34.3 (9)
C4—C4A—C8A—O14.5 (3)C10—C11—C15—F1A−91.9 (6)
C5—C4A—C8A—C86.5 (3)C12—C11—C15—F1A86.5 (6)
C4—C4A—C8A—C8−174.2 (2)C10—C11—C15—F2B49.0 (7)
C2—O1—C8A—C4A11.7 (3)C12—C11—C15—F2B−132.6 (6)
C2—O1—C8A—C8−169.41 (19)C10—C11—C15—F2A20.3 (5)
C7—C8—C8A—C4A18.8 (3)C12—C11—C15—F2A−161.3 (4)
D—H···AD—HH···AD···AD—H···A
N21—H21A···N20i0.862.173.025 (3)171
N21—H21B···O2ii0.862.102.934 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N21—H21A⋯N20i 0.862.173.025 (3)171
N21—H21B⋯O2ii 0.862.102.934 (2)163

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Amino-5-oxo-4-phenyl-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile.

Authors:  Xiaoli Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09

3.  2-Amino-7,7-dimethyl-5-oxo-4-(p-tol-yl)-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile.

Authors:  Sumati Anthal; Goutam Brahmachari; Sujay Laskar; Bubun Banerjee; Rajni Kant; Vivek K Gupta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28

4.  2-Amino-7,7-dimethyl-5-oxo-4-[3-(trifluoro-meth-yl)phen-yl]-1,4,5,6,7,8-hexa-hydro-quinoline-3-carbonitrile.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; D R Patil; A G Mulik; Madhukar B Deshmukh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-19

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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