Literature DB >> 23476588

4-Hy-droxy-1,1'-bis-[(S)-1-phenyl-eth-yl]-5,5',6,6'-tetra-hydro-3,4'-bipyridine-2,2'(1H,1'H)-dione.

Nancy Romero1, Dino Gnecco, Joel Terán, Sylvain Bernès.   

Abstract

The title bis-piperidine, C26H28N2O3, was unexpectedly obtained via a dimerization mechanism promoted by acetic acid when performing the Dieckmann cyclization of a chiral amido ester. The S,S configuration was assigned by reference to the enanti-omerically pure starting material. In the mol-ecule, two core heterocycles are linked by a σ bond. One ring includes a keto-enol group, while the other presents an enone functionality. Both rings present a conformation inter-mediate between envelope and screw-boat, and the dihedral angle between the mean planes passing through the rings [48.9 (1)°] is large enough to avoid hindrance between ring substituents. The enol tautomeric form in one ring favors the formation of strong inter-molecular O-H⋯O=C hydrogen bonds. The resulting one-dimensional supra-molecular structure features single-stranded helices running along the 21 screw axis parallel to [100].

Entities:  

Year:  2013        PMID: 23476588      PMCID: PMC3588428          DOI: 10.1107/S1600536813004017

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For natural products having a bis-piperidine substructure, see: Gil et al. (1995 ▶); Torres et al. (2000 ▶); Matsunaga et al. (2004 ▶); Smith & Sulikowski (2010 ▶). For related structures of monocyclic piperidines, see: Didierjean et al. (2004 ▶); Romero et al. (2005 ▶). For the application of Dieckmann condensation in organic synthesis, see: Scheiber & Nemes (2008 ▶). For an example of self-condensation of a dione similar to that used for the synthesis of the title compound, see: Sugasawa & Oka (1954 ▶).

Experimental

Crystal data

C26H28N2O3 M = 416.50 Orthorhombic, a = 9.6647 (13) Å b = 9.7281 (10) Å c = 23.684 (3) Å V = 2226.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.60 × 0.60 × 0.08 mm

Data collection

Bruker P4 diffractometer 3173 measured reflections 2250 independent reflections 1843 reflections with I > 2σ(I) R int = 0.019 3 standard reflections every 97 reflections intensity decay: 1.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.095 S = 1.04 2250 reflections 286 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.15 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813004017/nr2039sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004017/nr2039Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004017/nr2039Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H28N2O3Dx = 1.242 Mg m3
Mr = 416.50Melting point: 444 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 62 reflections
a = 9.6647 (13) Åθ = 4.7–12.0°
b = 9.7281 (10) ŵ = 0.08 mm1
c = 23.684 (3) ÅT = 296 K
V = 2226.7 (5) Å3Plate, colourless
Z = 40.60 × 0.60 × 0.08 mm
F(000) = 888
Bruker P4 diffractometerRint = 0.019
Radiation source: fine-focus sealed tubeθmax = 25.0°, θmin = 2.3°
Graphite monochromatorh = −11→2
ω scansk = −11→1
3173 measured reflectionsl = −1→28
2250 independent reflections3 standard reflections every 97 reflections
1843 reflections with I > 2σ(I) intensity decay: 1.5%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.095w = 1/[σ2(Fo2) + (0.0483P)2 + 0.2404P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2250 reflectionsΔρmax = 0.19 e Å3
286 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.0098 (15)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Assigned from synthesis. Friedel pairs (621) were merged
xyzUiso*/Ueq
N10.6918 (2)0.2061 (2)0.96330 (9)0.0342 (5)
C20.7571 (3)0.3060 (3)0.93294 (10)0.0324 (6)
O20.8401 (2)0.27815 (18)0.89463 (8)0.0451 (5)
C30.7286 (3)0.4508 (3)0.94792 (10)0.0330 (6)
C40.6613 (3)0.4827 (3)0.99592 (11)0.0360 (6)
O40.6401 (2)0.61396 (19)1.01054 (8)0.0515 (6)
H40.591 (4)0.629 (4)1.0457 (14)0.077*
C50.6126 (3)0.3712 (3)1.03453 (11)0.0397 (7)
H5A0.53150.40211.05510.048*
H5B0.68450.34981.06170.048*
C60.5774 (3)0.2438 (3)1.00066 (12)0.0395 (6)
H6A0.55790.16831.02620.047*
H6B0.49500.26080.97830.047*
C70.7035 (3)0.0612 (3)0.94466 (11)0.0364 (7)
H7A0.78070.05750.91790.044*
C80.7425 (4)−0.0316 (3)0.99393 (13)0.0523 (8)
H8A0.82330.00431.01230.078*
H8B0.7616−0.12250.98020.078*
H8C0.6673−0.03521.02040.078*
C90.5745 (3)0.0181 (3)0.91220 (11)0.0412 (7)
C100.5143 (4)−0.1103 (4)0.91817 (15)0.0656 (10)
H10A0.5525−0.17380.94300.079*
C110.3974 (5)−0.1450 (5)0.8874 (2)0.0934 (15)
H11A0.3575−0.23120.89200.112*
C120.3405 (5)−0.0541 (6)0.8505 (2)0.0936 (15)
H12A0.2614−0.07790.83040.112*
C130.3993 (4)0.0718 (5)0.84287 (17)0.0778 (12)
H13A0.36160.13320.81700.093*
C140.5151 (3)0.1078 (4)0.87365 (12)0.0557 (9)
H14A0.55410.19420.86840.067*
N1'0.8952 (2)0.7324 (2)0.82498 (8)0.0355 (5)
C2'0.9292 (3)0.7510 (3)0.87967 (10)0.0340 (6)
O2'1.0011 (2)0.8499 (2)0.89480 (8)0.0513 (6)
C3'0.8771 (3)0.6493 (3)0.92029 (10)0.0370 (7)
H3'A0.91100.65180.95700.044*
C4'0.7837 (3)0.5535 (3)0.90715 (10)0.0321 (6)
C5'0.7280 (3)0.5523 (3)0.84798 (11)0.0430 (7)
H5'A0.70120.45930.83800.052*
H5'B0.64620.60980.84610.052*
C6'0.8320 (3)0.6029 (3)0.80695 (10)0.0445 (7)
H6'A0.90380.53410.80240.053*
H6'B0.78790.61610.77060.053*
C7'0.9595 (3)0.8177 (3)0.78050 (10)0.0380 (7)
H7'A0.99650.90020.79890.046*
C8'1.0818 (3)0.7410 (3)0.75459 (13)0.0517 (8)
H8'A1.14310.71120.78410.078*
H8'B1.13070.80110.72940.078*
H8'C1.04860.66250.73410.078*
C9'0.8503 (3)0.8648 (3)0.73878 (11)0.0361 (6)
C10'0.8695 (3)0.8573 (3)0.68070 (11)0.0454 (7)
H10B0.95020.81890.66630.055*
C11'0.7697 (4)0.9065 (4)0.64424 (13)0.0623 (10)
H11B0.78480.90150.60550.075*
C12'0.6498 (4)0.9619 (4)0.66362 (14)0.0677 (11)
H12B0.58380.99500.63850.081*
C13'0.6274 (4)0.9684 (4)0.72079 (15)0.0694 (10)
H13B0.54511.00500.73450.083*
C14'0.7266 (3)0.9210 (3)0.75817 (12)0.0540 (9)
H14B0.71040.92670.79680.065*
U11U22U33U12U13U23
N10.0404 (13)0.0275 (11)0.0346 (11)−0.0001 (11)0.0091 (10)−0.0041 (9)
C20.0325 (14)0.0351 (14)0.0297 (12)−0.0011 (13)0.0019 (12)−0.0017 (12)
O20.0508 (12)0.0422 (11)0.0423 (10)0.0002 (10)0.0178 (10)−0.0038 (9)
C30.0391 (15)0.0313 (14)0.0285 (13)−0.0026 (13)0.0019 (13)0.0015 (11)
C40.0411 (15)0.0299 (13)0.0369 (14)0.0002 (13)0.0029 (14)−0.0022 (12)
O40.0783 (15)0.0321 (10)0.0440 (11)0.0044 (12)0.0186 (12)−0.0040 (9)
C50.0492 (17)0.0355 (14)0.0345 (13)0.0030 (15)0.0127 (13)−0.0003 (12)
C60.0438 (15)0.0335 (13)0.0413 (13)−0.0009 (15)0.0131 (14)0.0015 (12)
C70.0408 (16)0.0304 (14)0.0379 (15)0.0023 (13)0.0076 (13)−0.0029 (12)
C80.069 (2)0.0383 (16)0.0498 (17)0.0068 (17)0.0001 (18)0.0023 (14)
C90.0424 (16)0.0387 (16)0.0425 (15)−0.0041 (15)0.0104 (14)−0.0084 (13)
C100.075 (2)0.055 (2)0.067 (2)−0.022 (2)0.007 (2)−0.0112 (18)
C110.090 (3)0.079 (3)0.112 (3)−0.046 (3)0.012 (3)−0.025 (3)
C120.061 (3)0.115 (4)0.105 (3)−0.021 (3)−0.015 (3)−0.047 (3)
C130.064 (2)0.100 (3)0.069 (2)0.016 (3)−0.022 (2)−0.023 (2)
C140.060 (2)0.0543 (19)0.0529 (18)0.0013 (19)−0.0122 (17)−0.0087 (16)
N1'0.0458 (13)0.0324 (12)0.0283 (10)−0.0111 (11)−0.0044 (10)0.0032 (9)
C2'0.0389 (14)0.0290 (13)0.0341 (13)−0.0029 (14)−0.0037 (12)−0.0004 (12)
O2'0.0703 (14)0.0451 (12)0.0385 (10)−0.0271 (12)−0.0081 (11)−0.0027 (9)
C3'0.0493 (17)0.0367 (15)0.0251 (12)−0.0032 (15)−0.0030 (13)−0.0004 (11)
C4'0.0361 (15)0.0295 (13)0.0308 (13)0.0006 (13)0.0040 (12)−0.0010 (11)
C5'0.0483 (17)0.0441 (16)0.0364 (13)−0.0171 (16)−0.0055 (14)0.0013 (13)
C6'0.0631 (19)0.0415 (15)0.0290 (13)−0.0164 (17)−0.0049 (14)−0.0005 (13)
C7'0.0437 (16)0.0348 (14)0.0354 (14)−0.0078 (14)0.0014 (13)0.0067 (12)
C8'0.0450 (16)0.0530 (18)0.0570 (17)0.0050 (17)0.0057 (15)0.0153 (16)
C9'0.0420 (15)0.0326 (14)0.0336 (13)−0.0035 (14)0.0037 (13)0.0026 (12)
C10'0.0488 (17)0.0521 (18)0.0354 (13)0.0087 (16)0.0085 (15)0.0035 (13)
C11'0.072 (2)0.080 (2)0.0351 (15)0.010 (2)−0.0004 (17)0.0130 (17)
C12'0.066 (2)0.083 (3)0.054 (2)0.022 (2)−0.007 (2)0.0172 (19)
C13'0.052 (2)0.086 (3)0.070 (2)0.023 (2)0.0059 (19)0.006 (2)
C14'0.0559 (19)0.066 (2)0.0401 (15)0.0104 (19)0.0106 (16)0.0035 (15)
N1—C21.363 (3)C14—H14A0.9300
N1—C61.463 (3)N1'—C2'1.348 (3)
N1—C71.482 (3)N1'—C6'1.464 (3)
C2—O21.241 (3)N1'—C7'1.478 (3)
C2—C31.478 (4)C2'—O2'1.240 (3)
C3—C41.346 (4)C2'—C3'1.469 (4)
C3—C4'1.488 (3)C3'—C4'1.334 (4)
C4—O41.339 (3)C3'—H3'A0.9300
C4—C51.495 (4)C4'—C5'1.501 (4)
O4—H40.97 (4)C5'—C6'1.482 (4)
C5—C61.515 (4)C5'—H5'A0.9700
C5—H5A0.9700C5'—H5'B0.9700
C5—H5B0.9700C6'—H6'A0.9700
C6—H6A0.9700C6'—H6'B0.9700
C6—H6B0.9700C7'—C9'1.517 (4)
C7—C81.523 (4)C7'—C8'1.527 (4)
C7—C91.524 (4)C7'—H7'A0.9800
C7—H7A0.9800C8'—H8'A0.9600
C8—H8A0.9600C8'—H8'B0.9600
C8—H8B0.9600C8'—H8'C0.9600
C8—H8C0.9600C9'—C10'1.390 (4)
C9—C101.385 (5)C9'—C14'1.392 (4)
C9—C141.388 (4)C10'—C11'1.380 (4)
C10—C111.386 (6)C10'—H10B0.9300
C10—H10A0.9300C11'—C12'1.357 (5)
C11—C121.359 (6)C11'—H11B0.9300
C11—H11A0.9300C12'—C13'1.373 (5)
C12—C131.362 (6)C12'—H12B0.9300
C12—H12A0.9300C13'—C14'1.384 (5)
C13—C141.381 (5)C13'—H13B0.9300
C13—H13A0.9300C14'—H14B0.9300
C2—N1—C6119.3 (2)C2'—N1'—C6'119.8 (2)
C2—N1—C7119.1 (2)C2'—N1'—C7'120.4 (2)
C6—N1—C7118.4 (2)C6'—N1'—C7'116.79 (19)
O2—C2—N1121.9 (2)O2'—C2'—N1'121.2 (2)
O2—C2—C3120.3 (2)O2'—C2'—C3'121.7 (2)
N1—C2—C3117.8 (2)N1'—C2'—C3'117.1 (2)
C4—C3—C2120.8 (2)C4'—C3'—C2'123.3 (2)
C4—C3—C4'124.5 (2)C4'—C3'—H3'A118.3
C2—C3—C4'114.6 (2)C2'—C3'—H3'A118.3
O4—C4—C3120.8 (2)C3'—C4'—C3124.0 (2)
O4—C4—C5119.1 (2)C3'—C4'—C5'117.8 (2)
C3—C4—C5120.1 (2)C3—C4'—C5'118.2 (2)
C4—O4—H4116 (2)C6'—C5'—C4'111.5 (2)
C4—C5—C6109.9 (2)C6'—C5'—H5'A109.3
C4—C5—H5A109.7C4'—C5'—H5'A109.3
C6—C5—H5A109.7C6'—C5'—H5'B109.3
C4—C5—H5B109.7C4'—C5'—H5'B109.3
C6—C5—H5B109.7H5'A—C5'—H5'B108.0
H5A—C5—H5B108.2N1'—C6'—C5'112.2 (2)
N1—C6—C5110.8 (2)N1'—C6'—H6'A109.2
N1—C6—H6A109.5C5'—C6'—H6'A109.2
C5—C6—H6A109.5N1'—C6'—H6'B109.2
N1—C6—H6B109.5C5'—C6'—H6'B109.2
C5—C6—H6B109.5H6'A—C6'—H6'B107.9
H6A—C6—H6B108.1N1'—C7'—C9'110.0 (2)
N1—C7—C8110.8 (2)N1'—C7'—C8'109.7 (2)
N1—C7—C9110.5 (2)C9'—C7'—C8'115.1 (2)
C8—C7—C9115.2 (2)N1'—C7'—H7'A107.2
N1—C7—H7A106.6C9'—C7'—H7'A107.2
C8—C7—H7A106.6C8'—C7'—H7'A107.2
C9—C7—H7A106.6C7'—C8'—H8'A109.5
C7—C8—H8A109.5C7'—C8'—H8'B109.5
C7—C8—H8B109.5H8'A—C8'—H8'B109.5
H8A—C8—H8B109.5C7'—C8'—H8'C109.5
C7—C8—H8C109.5H8'A—C8'—H8'C109.5
H8A—C8—H8C109.5H8'B—C8'—H8'C109.5
H8B—C8—H8C109.5C10'—C9'—C14'117.5 (3)
C10—C9—C14117.4 (3)C10'—C9'—C7'122.4 (3)
C10—C9—C7122.7 (3)C14'—C9'—C7'120.1 (2)
C14—C9—C7119.8 (3)C11'—C10'—C9'120.5 (3)
C9—C10—C11120.5 (4)C11'—C10'—H10B119.8
C9—C10—H10A119.7C9'—C10'—H10B119.8
C11—C10—H10A119.7C12'—C11'—C10'121.5 (3)
C12—C11—C10120.6 (4)C12'—C11'—H11B119.3
C12—C11—H11A119.7C10'—C11'—H11B119.3
C10—C11—H11A119.7C11'—C12'—C13'119.1 (3)
C11—C12—C13120.1 (4)C11'—C12'—H12B120.4
C11—C12—H12A120.0C13'—C12'—H12B120.4
C13—C12—H12A120.0C12'—C13'—C14'120.4 (3)
C12—C13—C14119.8 (4)C12'—C13'—H13B119.8
C12—C13—H13A120.1C14'—C13'—H13B119.8
C14—C13—H13A120.1C13'—C14'—C9'121.0 (3)
C13—C14—C9121.5 (4)C13'—C14'—H14B119.5
C13—C14—H14A119.2C9'—C14'—H14B119.5
C9—C14—H14A119.2
C6—N1—C2—O2−169.0 (2)C6'—N1'—C2'—O2'169.0 (3)
C7—N1—C2—O2−9.4 (4)C7'—N1'—C2'—O2'9.0 (4)
C6—N1—C2—C312.4 (4)C6'—N1'—C2'—C3'−11.1 (4)
C7—N1—C2—C3172.0 (2)C7'—N1'—C2'—C3'−171.1 (2)
O2—C2—C3—C4−166.8 (3)O2'—C2'—C3'—C4'170.0 (3)
N1—C2—C3—C411.8 (4)N1'—C2'—C3'—C4'−10.0 (4)
O2—C2—C3—C4'11.4 (4)C2'—C3'—C4'—C3−179.2 (3)
N1—C2—C3—C4'−170.0 (2)C2'—C3'—C4'—C5'−1.1 (4)
C2—C3—C4—O4177.4 (3)C4—C3—C4'—C3'59.3 (4)
C4'—C3—C4—O4−0.5 (4)C2—C3—C4'—C3'−118.7 (3)
C2—C3—C4—C5−0.8 (4)C4—C3—C4'—C5'−118.8 (3)
C4'—C3—C4—C5−178.8 (3)C2—C3—C4'—C5'63.2 (3)
O4—C4—C5—C6150.8 (3)C3'—C4'—C5'—C6'30.6 (4)
C3—C4—C5—C6−30.9 (4)C3—C4'—C5'—C6'−151.1 (2)
C2—N1—C6—C5−44.4 (3)C2'—N1'—C6'—C5'40.8 (4)
C7—N1—C6—C5155.8 (2)C7'—N1'—C6'—C5'−158.4 (2)
C4—C5—C6—N151.5 (3)C4'—C5'—C6'—N1'−48.9 (3)
C2—N1—C7—C8131.3 (3)C2'—N1'—C7'—C9'−135.9 (3)
C6—N1—C7—C8−68.8 (3)C6'—N1'—C7'—C9'63.5 (3)
C2—N1—C7—C9−99.8 (3)C2'—N1'—C7'—C8'96.5 (3)
C6—N1—C7—C960.1 (3)C6'—N1'—C7'—C8'−64.1 (3)
N1—C7—C9—C10−140.3 (3)N1'—C7'—C9'—C10'−133.8 (3)
C8—C7—C9—C10−13.8 (4)C8'—C7'—C9'—C10'−9.2 (4)
N1—C7—C9—C1441.5 (3)N1'—C7'—C9'—C14'47.8 (3)
C8—C7—C9—C14168.0 (3)C8'—C7'—C9'—C14'172.3 (3)
C14—C9—C10—C11−1.3 (5)C14'—C9'—C10'—C11'1.1 (5)
C7—C9—C10—C11−179.6 (3)C7'—C9'—C10'—C11'−177.3 (3)
C9—C10—C11—C120.5 (6)C9'—C10'—C11'—C12'−0.7 (5)
C10—C11—C12—C130.9 (7)C10'—C11'—C12'—C13'−0.3 (6)
C11—C12—C13—C14−1.4 (7)C11'—C12'—C13'—C14'0.9 (6)
C12—C13—C14—C90.5 (5)C12'—C13'—C14'—C9'−0.5 (6)
C10—C9—C14—C130.8 (5)C10'—C9'—C14'—C13'−0.5 (5)
C7—C9—C14—C13179.1 (3)C7'—C9'—C14'—C13'178.0 (3)
D—H···AD—HH···AD···AD—H···A
O4—H4···O2′i0.97 (4)1.67 (4)2.637 (3)177 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H4⋯O2′i 0.97 (4)1.67 (4)2.637 (3)177 (4)

Symmetry code: (i) .

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