Literature DB >> 23476562

3,3'-(1-Oxopropane-1,3-di-yl)bis-(1,3-thia-zolidine-2-thione) chloro-benzene hemisolvate.

Christine Franzel1, Andrew Purdy, Ray J Butcher.   

Abstract

The title compound, C9H12N2OS4·0.5C6H5Cl, which contains two 1,3-thia-zolidine-2-thione rings, is a by-product of the synthesis of 3-acryloyl-1,3-thia-zolidine-2-thione. The dihedral angle between these rings is 79.95 (9)°, with both rings displaying a twisted conformation. The twist angle of the amide group is 5.6 (1)°. In the crystal, the molecules are linked into [001] chains by C-H⋯O interactions. The chloro-benzene solvent mol-ecule was found to show unresolvable disorder about a centre of inversion and its contribution to the scattering was removed with the SQUEEZE option in PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155].

Entities:  

Year:  2013        PMID: 23476562      PMCID: PMC3588431          DOI: 10.1107/S1600536813003292

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For N-substituted 1,3-thia­zolidine-2-thione and for further synthetic details, see: Evans & Thomson (2005 ▶). For the defin­ition of amide twist angles, see: Yamada et al. (1993 ▶). For details of the use of SQUEEZE, see: van der Sluis & Spek (1990 ▶).

Experimental

Crystal data

C9H12N2OS4·0.5C6H5Cl M = 348.72 Monoclinic, a = 8.59506 (18) Å b = 9.4435 (2) Å c = 18.2640 (4) Å β = 92.614 (2)° V = 1480.90 (6) Å3 Z = 4 Cu Kα radiation μ = 6.68 mm−1 T = 123 K 0.45 × 0.25 × 0.14 mm

Data collection

Agilent Xcalibur (Ruby, Gemini) diffractometer Absorption correction: multi-scan [CrysAlis PRO (Agilent, 2012 ▶), based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.757, T max = 1.000 5329 measured reflections 2971 independent reflections 2486 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.116 S = 1.05 2971 reflections 145 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813003292/hb7002sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813003292/hb7002Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813003292/hb7002Isup3.mol Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813003292/hb7002Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H12N2OS4·0.5C6H5ClF(000) = 724
Mr = 348.72Dx = 1.564 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 8.59506 (18) ÅCell parameters from 2930 reflections
b = 9.4435 (2) Åθ = 4.7–75.6°
c = 18.2640 (4) ŵ = 6.68 mm1
β = 92.614 (2)°T = 123 K
V = 1480.90 (6) Å3Prism, colorless
Z = 40.45 × 0.25 × 0.14 mm
Agilent Xcalibur (Ruby, Gemini) diffractometer2971 independent reflections
Radiation source: Enhance (Cu) X-ray Source2486 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
Detector resolution: 10.5081 pixels mm-1θmax = 75.8°, θmin = 4.9°
ω scansh = −9→10
Absorption correction: multi-scan [CrysAlis PRO (Agilent, 2012), based on expressions derived by Clark & Reid (1995)]k = −11→10
Tmin = 0.757, Tmax = 1.000l = −22→20
5329 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0574P)2 + 1.0183P] where P = (Fo2 + 2Fc2)/3
2971 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.32 e Å3
Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.35.21 (release 20-01-2012 CrysAlis171 .NET) (compiled Jan 23 2012,18:06:46) Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by R.C. Clark & J.S. Reid. (Clark, R. C. & Reid, J. S. (1995). Acta Cryst. A51, 887-897)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.38391 (7)0.58687 (8)0.30163 (4)0.02748 (18)
S20.16697 (8)0.60275 (8)0.17409 (4)0.02960 (19)
S30.75412 (7)0.06152 (7)0.39778 (4)0.02613 (18)
S41.01178 (8)0.25235 (8)0.44956 (4)0.02741 (18)
O10.5444 (2)0.2367 (2)0.15272 (10)0.0247 (4)
N10.3858 (2)0.4161 (2)0.17961 (11)0.0194 (4)
N20.8680 (3)0.2837 (2)0.32473 (12)0.0232 (5)
C10.3274 (3)0.5256 (3)0.22011 (14)0.0210 (5)
C20.1553 (4)0.4708 (4)0.10302 (18)0.0398 (8)
H2A0.06920.40390.11140.048*
H2B0.13630.51600.05450.048*
C30.3092 (3)0.3939 (3)0.10594 (14)0.0235 (5)
H3A0.29220.29150.09710.028*
H3B0.37620.43090.06760.028*
C40.5170 (3)0.3302 (3)0.19528 (14)0.0193 (5)
C50.6201 (3)0.3555 (3)0.26305 (13)0.0180 (5)
H5A0.56210.33380.30730.022*
H5B0.65220.45610.26530.022*
C60.7637 (3)0.2609 (3)0.26076 (14)0.0254 (5)
H6A0.73080.16040.25900.030*
H6B0.81960.28150.21580.030*
C70.8692 (3)0.2009 (3)0.38392 (13)0.0195 (5)
C81.0683 (4)0.4060 (4)0.39771 (18)0.0404 (8)
H8A1.03060.49370.42060.048*
H8B1.18310.41110.39590.048*
C90.9945 (4)0.3887 (3)0.32101 (18)0.0355 (7)
H9A0.95230.48040.30300.043*
H9B1.07320.35580.28690.043*
U11U22U33U12U13U23
S10.0230 (3)0.0325 (4)0.0272 (3)0.0043 (3)0.0034 (2)−0.0095 (3)
S20.0241 (3)0.0368 (4)0.0281 (3)0.0123 (3)0.0033 (2)−0.0017 (3)
S30.0224 (3)0.0275 (3)0.0290 (3)−0.0045 (2)0.0071 (2)−0.0041 (3)
S40.0287 (3)0.0288 (4)0.0242 (3)−0.0057 (3)−0.0048 (2)0.0034 (3)
O10.0292 (9)0.0204 (9)0.0244 (9)0.0041 (8)0.0012 (7)−0.0059 (7)
N10.0190 (9)0.0212 (10)0.0180 (9)−0.0019 (8)0.0027 (7)0.0001 (8)
N20.0277 (11)0.0201 (11)0.0216 (10)0.0042 (9)−0.0003 (8)−0.0007 (8)
C10.0167 (11)0.0217 (12)0.0252 (12)−0.0014 (9)0.0066 (9)0.0029 (10)
C20.0347 (16)0.0485 (19)0.0350 (16)0.0171 (15)−0.0120 (13)−0.0150 (14)
C30.0253 (12)0.0265 (13)0.0189 (12)0.0016 (11)0.0019 (9)−0.0003 (10)
C40.0189 (11)0.0175 (11)0.0218 (12)−0.0024 (9)0.0053 (9)0.0025 (9)
C50.0201 (11)0.0170 (11)0.0170 (11)0.0000 (9)0.0024 (9)0.0004 (9)
C60.0257 (12)0.0271 (14)0.0228 (12)0.0075 (11)−0.0038 (10)−0.0027 (11)
C70.0157 (10)0.0224 (12)0.0205 (11)0.0063 (9)0.0019 (9)−0.0045 (9)
C80.0521 (19)0.0308 (16)0.0373 (17)−0.0188 (14)−0.0080 (14)0.0101 (13)
C90.0443 (17)0.0287 (15)0.0327 (15)−0.0086 (13)−0.0064 (13)0.0085 (12)
S1—C11.650 (3)C2—H2B0.9900
S2—C11.741 (3)C3—H3A0.9900
S2—C21.799 (3)C3—H3B0.9900
S3—C71.673 (3)C4—C51.508 (3)
S4—C71.744 (3)C5—C61.526 (3)
S4—C81.811 (3)C5—H5A0.9900
O1—C41.206 (3)C5—H5B0.9900
N1—C11.379 (3)C6—H6A0.9900
N1—C41.408 (3)C6—H6B0.9900
N1—C31.486 (3)C8—C91.520 (4)
N2—C71.334 (4)C8—H8A0.9900
N2—C61.456 (3)C8—H8B0.9900
N2—C91.475 (4)C9—H9A0.9900
C2—C31.508 (4)C9—H9B0.9900
C2—H2A0.9900
C1—S2—C294.31 (13)C4—C5—H5A109.8
C7—S4—C893.47 (14)C6—C5—H5A109.8
C1—N1—C4129.1 (2)C4—C5—H5B109.8
C1—N1—C3115.8 (2)C6—C5—H5B109.8
C4—N1—C3114.9 (2)H5A—C5—H5B108.3
C7—N2—C6123.1 (2)N2—C6—C5111.2 (2)
C7—N2—C9116.9 (2)N2—C6—H6A109.4
C6—N2—C9119.4 (2)C5—C6—H6A109.4
N1—C1—S1130.4 (2)N2—C6—H6B109.4
N1—C1—S2110.76 (19)C5—C6—H6B109.4
S1—C1—S2118.87 (15)H6A—C6—H6B108.0
C3—C2—S2106.8 (2)N2—C7—S3127.0 (2)
C3—C2—H2A110.4N2—C7—S4111.9 (2)
S2—C2—H2A110.4S3—C7—S4121.13 (15)
C3—C2—H2B110.4C9—C8—S4106.6 (2)
S2—C2—H2B110.4C9—C8—H8A110.4
H2A—C2—H2B108.6S4—C8—H8A110.4
N1—C3—C2108.4 (2)C9—C8—H8B110.4
N1—C3—H3A110.0S4—C8—H8B110.4
C2—C3—H3A110.0H8A—C8—H8B108.6
N1—C3—H3B110.0N2—C9—C8107.9 (2)
C2—C3—H3B110.0N2—C9—H9A110.1
H3A—C3—H3B108.4C8—C9—H9A110.1
O1—C4—N1117.9 (2)N2—C9—H9B110.1
O1—C4—C5121.4 (2)C8—C9—H9B110.1
N1—C4—C5120.7 (2)H9A—C9—H9B108.4
C4—C5—C6109.3 (2)
C4—N1—C1—S1−3.8 (4)N1—C4—C5—C6−172.5 (2)
C3—N1—C1—S1−177.4 (2)C7—N2—C6—C597.3 (3)
C4—N1—C1—S2177.3 (2)C9—N2—C6—C5−92.1 (3)
C3—N1—C1—S23.7 (3)C4—C5—C6—N2179.0 (2)
C2—S2—C1—N18.0 (2)C6—N2—C7—S3−1.3 (4)
C2—S2—C1—S1−170.96 (19)C9—N2—C7—S3−172.1 (2)
C1—S2—C2—C3−16.8 (3)C6—N2—C7—S4177.92 (19)
C1—N1—C3—C2−16.4 (3)C9—N2—C7—S47.1 (3)
C4—N1—C3—C2169.0 (2)C8—S4—C7—N24.2 (2)
S2—C2—C3—N120.6 (3)C8—S4—C7—S3−176.58 (19)
C1—N1—C4—O1177.7 (2)C7—S4—C8—C9−13.2 (3)
C3—N1—C4—O1−8.6 (3)C7—N2—C9—C8−17.1 (4)
C1—N1—C4—C5−2.6 (4)C6—N2—C9—C8171.7 (3)
C3—N1—C4—C5171.0 (2)S4—C8—C9—N218.3 (3)
O1—C4—C5—C67.2 (3)
D—H···AD—HH···AD···AD—H···A
C9—H9A···O1i0.992.553.340 (4)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C9—H9A⋯O1i 0.992.553.340 (4)137

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ni(II) Tol-BINAP-catalyzed enantioselective orthoester alkylations of N-acylthiazolidinethiones.

Authors:  David A Evans; Regan J Thomson
Journal:  J Am Chem Soc       Date:  2005-08-03       Impact factor: 15.419

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.