Literature DB >> 23476560

[4-(4-Meth-oxy-phen-yl)-1-methyl-3-nitro-pyrrolidin-3-yl]methanol.

K Prathebha1, S Sathya, G Usha, N Sivakumar, M Bakthadoss.   

Abstract

In the title compound, C13H18N2O4, the dihedral angle between the benzene and pyrrolidine (all atoms) rings is 70.6 (1)°. The pyrrolidine ring adopts a half-chair conformation. In the crystal, mol-ecules form chains along the c-axis direction linked by O-H⋯N hydrogen bonds, which are then connected by C-H⋯O inter-actions, forming a sheet parallel to the bc plane.

Entities:  

Year:  2013        PMID: 23476560      PMCID: PMC3588458          DOI: 10.1107/S1600536813003073

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For information on the pyrrolidine ring in biologically active natural compounds, see: Gu et al. (2004 ▶). For the use of pyrrolidine-containing mol­ecules in the treatment of diseases, see, for example: Horri et al. (1986 ▶) for diabetes and Karpas et al. (1988 ▶) for viral infections. For bond lengths in a related structure, see: Jayabharathi et al. (2009 ▶).

Experimental

Crystal data

C13H18N2O4 M = 266.29 Monoclinic, a = 11.6827 (10) Å b = 11.1912 (11) Å c = 11.1789 (11) Å β = 109.118 (2)° V = 1381.0 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.22 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer 12464 measured reflections 3407 independent reflections 2282 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.162 S = 1.01 3407 reflections 172 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813003073/nk2193sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813003073/nk2193Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813003073/nk2193Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N2O4F(000) = 568
Mr = 266.29Dx = 1.281 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3407 reflections
a = 11.6827 (10) Åθ = 1.5–28.3°
b = 11.1912 (11) ŵ = 0.10 mm1
c = 11.1789 (11) ÅT = 293 K
β = 109.118 (2)°Block, colourless
V = 1381.0 (2) Å30.22 × 0.20 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2282 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
Graphite monochromatorθmax = 28.3°, θmin = 1.8°
ω and φ scanh = −15→15
12464 measured reflectionsk = −14→14
3407 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
3407 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.36799 (16)0.15244 (19)0.51274 (18)0.0686 (5)
H1A−0.44680.17720.45920.103*
H1B−0.37430.07700.55090.103*
H1C−0.31510.14450.46310.103*
C2−0.20810 (13)0.21887 (15)0.69433 (15)0.0481 (4)
C3−0.13157 (13)0.12749 (15)0.68781 (14)0.0487 (4)
H3−0.15400.07510.61950.058*
C4−0.02079 (13)0.11333 (14)0.78317 (14)0.0451 (4)
H40.03010.05130.77720.054*
C50.01580 (12)0.18913 (13)0.88680 (13)0.0397 (3)
C6−0.06274 (14)0.28269 (16)0.88911 (16)0.0544 (4)
H6−0.04070.33550.95710.065*
C7−0.17096 (15)0.29922 (17)0.79468 (17)0.0589 (5)
H7−0.21970.36410.79760.071*
C80.13415 (12)0.17615 (13)0.99434 (12)0.0388 (3)
H80.11980.20541.07080.047*
C90.24446 (12)0.24842 (13)0.98146 (12)0.0380 (3)
C100.22476 (13)0.29756 (15)0.84980 (13)0.0443 (4)
H10A0.20560.23300.78850.053*
H10B0.15760.35350.82700.053*
C110.35084 (14)0.16266 (15)1.02668 (14)0.0484 (4)
H11A0.36720.12560.95550.058*
H11B0.42320.20391.07830.058*
C120.38953 (16)−0.03316 (17)1.12644 (17)0.0643 (5)
H12A0.4701−0.01191.17830.096*
H12B0.3916−0.06591.04780.096*
H12C0.3573−0.09151.16970.096*
C130.18708 (14)0.05085 (15)1.02428 (15)0.0481 (4)
H13A0.14510.00541.07110.058*
H13B0.18260.00790.94750.058*
N10.31240 (11)0.07359 (12)1.10121 (11)0.0433 (3)
N30.26471 (14)0.35622 (12)1.07021 (12)0.0509 (4)
O1−0.32042 (10)0.23895 (12)0.60855 (13)0.0663 (4)
O20.33114 (10)0.35553 (12)0.84933 (10)0.0578 (4)
H20.32130.38320.77880.087*
O30.18039 (14)0.42471 (12)1.05376 (14)0.0740 (4)
O40.36032 (15)0.36987 (16)1.15196 (15)0.1019 (6)
U11U22U33U12U13U23
C10.0467 (9)0.0815 (14)0.0648 (12)0.0034 (9)0.0006 (8)−0.0089 (10)
C20.0367 (7)0.0534 (10)0.0510 (9)−0.0001 (7)0.0101 (7)0.0014 (7)
C30.0456 (8)0.0500 (9)0.0461 (8)−0.0014 (7)0.0091 (7)−0.0101 (7)
C40.0396 (8)0.0449 (9)0.0480 (8)0.0002 (6)0.0107 (7)−0.0060 (6)
C50.0366 (7)0.0443 (8)0.0403 (7)−0.0048 (6)0.0155 (6)−0.0034 (6)
C60.0462 (9)0.0618 (11)0.0532 (9)0.0018 (8)0.0138 (7)−0.0168 (8)
C70.0485 (9)0.0589 (11)0.0675 (11)0.0111 (8)0.0164 (9)−0.0118 (8)
C80.0392 (7)0.0449 (8)0.0341 (7)−0.0050 (6)0.0147 (6)−0.0028 (6)
C90.0385 (7)0.0426 (8)0.0312 (7)−0.0060 (6)0.0092 (6)−0.0026 (5)
C100.0414 (8)0.0549 (9)0.0348 (7)−0.0099 (7)0.0098 (6)0.0016 (6)
C110.0406 (8)0.0611 (10)0.0440 (8)0.0002 (7)0.0148 (7)0.0069 (7)
C120.0694 (12)0.0594 (12)0.0626 (11)0.0198 (9)0.0196 (9)0.0076 (8)
C130.0489 (8)0.0451 (9)0.0473 (8)−0.0063 (7)0.0116 (7)0.0033 (6)
N10.0432 (7)0.0483 (8)0.0377 (6)0.0036 (5)0.0124 (5)0.0043 (5)
N30.0627 (9)0.0478 (8)0.0384 (7)−0.0138 (7)0.0114 (6)−0.0022 (6)
O10.0463 (7)0.0686 (9)0.0692 (8)0.0104 (6)−0.0013 (6)−0.0085 (6)
O20.0480 (6)0.0810 (9)0.0414 (6)−0.0216 (6)0.0105 (5)0.0112 (5)
O30.0861 (10)0.0537 (8)0.0824 (9)0.0001 (7)0.0281 (8)−0.0176 (7)
O40.0916 (11)0.0971 (12)0.0788 (10)−0.0172 (9)−0.0244 (9)−0.0309 (9)
C1—O11.415 (2)C9—C101.5165 (19)
C1—H1A0.9600C9—C111.520 (2)
C1—H1B0.9600C9—N31.5303 (19)
C1—H1C0.9600C10—O21.4035 (17)
C2—O11.3666 (18)C10—H10A0.9700
C2—C31.376 (2)C10—H10B0.9700
C2—C71.392 (2)C11—N11.4610 (19)
C3—C41.390 (2)C11—H11A0.9700
C3—H30.9300C11—H11B0.9700
C4—C51.386 (2)C12—N11.467 (2)
C4—H40.9300C12—H12A0.9600
C5—C61.398 (2)C12—H12B0.9600
C5—C81.5130 (19)C12—H12C0.9600
C6—C71.369 (2)C13—N11.4571 (19)
C6—H60.9300C13—H13A0.9700
C7—H70.9300C13—H13B0.9700
C8—C131.525 (2)N3—O41.1989 (19)
C8—C91.5676 (18)N3—O31.214 (2)
C8—H80.9800O2—H20.8200
O1—C1—H1A109.5C11—C9—C8104.53 (12)
O1—C1—H1B109.5N3—C9—C8107.72 (11)
H1A—C1—H1B109.5O2—C10—C9108.55 (11)
O1—C1—H1C109.5O2—C10—H10A110.0
H1A—C1—H1C109.5C9—C10—H10A110.0
H1B—C1—H1C109.5O2—C10—H10B110.0
O1—C2—C3125.19 (14)C9—C10—H10B110.0
O1—C2—C7115.70 (14)H10A—C10—H10B108.4
C3—C2—C7119.11 (14)N1—C11—C9104.48 (11)
C2—C3—C4120.13 (14)N1—C11—H11A110.9
C2—C3—H3119.9C9—C11—H11A110.9
C4—C3—H3119.9N1—C11—H11B110.9
C5—C4—C3121.74 (14)C9—C11—H11B110.9
C5—C4—H4119.1H11A—C11—H11B108.9
C3—C4—H4119.1N1—C12—H12A109.5
C4—C5—C6116.70 (13)N1—C12—H12B109.5
C4—C5—C8123.84 (13)H12A—C12—H12B109.5
C6—C5—C8119.46 (13)N1—C12—H12C109.5
C7—C6—C5122.22 (15)H12A—C12—H12C109.5
C7—C6—H6118.9H12B—C12—H12C109.5
C5—C6—H6118.9N1—C13—C8103.05 (12)
C6—C7—C2119.99 (15)N1—C13—H13A111.2
C6—C7—H7120.0C8—C13—H13A111.2
C2—C7—H7120.0N1—C13—H13B111.2
C5—C8—C13117.52 (12)C8—C13—H13B111.2
C5—C8—C9116.25 (11)H13A—C13—H13B109.1
C13—C8—C9102.02 (11)C13—N1—C11102.69 (11)
C5—C8—H8106.8C13—N1—C12113.98 (14)
C13—C8—H8106.8C11—N1—C12112.41 (12)
C9—C8—H8106.8O4—N3—O3122.84 (16)
C10—C9—C11113.55 (12)O4—N3—C9120.15 (15)
C10—C9—N3106.59 (12)O3—N3—C9117.01 (13)
C11—C9—N3110.26 (12)C2—O1—C1117.86 (14)
C10—C9—C8114.09 (11)C10—O2—H2109.5
O1—C2—C3—C4−177.74 (15)C11—C9—C10—O2−57.84 (17)
C7—C2—C3—C42.5 (2)N3—C9—C10—O263.75 (15)
C2—C3—C4—C50.3 (2)C8—C9—C10—O2−177.49 (12)
C3—C4—C5—C6−1.7 (2)C10—C9—C11—N1−144.62 (12)
C3—C4—C5—C8178.72 (14)N3—C9—C11—N195.86 (13)
C4—C5—C6—C70.4 (2)C8—C9—C11—N1−19.66 (14)
C8—C5—C6—C7179.95 (16)C5—C8—C13—N1163.40 (11)
C5—C6—C7—C22.4 (3)C9—C8—C13—N135.02 (13)
O1—C2—C7—C6176.40 (16)C8—C13—N1—C11−48.96 (14)
C3—C2—C7—C6−3.8 (3)C8—C13—N1—C12−170.81 (12)
C4—C5—C8—C13−28.9 (2)C9—C11—N1—C1342.62 (14)
C6—C5—C8—C13151.54 (15)C9—C11—N1—C12165.54 (13)
C4—C5—C8—C992.35 (17)C10—C9—N3—O4−115.56 (17)
C6—C5—C8—C9−87.21 (17)C11—C9—N3—O48.10 (19)
C5—C8—C9—C10−13.76 (18)C8—C9—N3—O4121.60 (16)
C13—C8—C9—C10115.42 (13)C10—C9—N3—O364.81 (17)
C5—C8—C9—C11−138.37 (12)C11—C9—N3—O3−171.52 (13)
C13—C8—C9—C11−9.19 (13)C8—C9—N3—O3−58.03 (17)
C5—C8—C9—N3104.35 (13)C3—C2—O1—C17.2 (3)
C13—C8—C9—N3−126.47 (12)C7—C2—O1—C1−173.08 (17)
D—H···AD—HH···AD···AD—H···A
O2—H2···N1i0.822.012.8237 (16)170
C1—H1A···O2ii0.962.513.390 (2)153
C3—H3···O3iii0.932.513.429 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯N1i 0.822.012.8237 (16)170
C1—H1A⋯O2ii 0.962.513.390 (2)153
C3—H3⋯O3iii 0.932.513.429 (2)171

Symmetry codes: (i) ; (ii) ; (iii) .

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