Literature DB >> 23476545

Bis-(3,5-diamino-4H-1,2,4-triazol-1-ium) 3,4-dioxocyclo-butane-1,2-diolate.

Hoong-Kun Fun1, Wan-Sin Loh, Atim Johnson, Sammer Yousuf, Ededet Eno.   

Abstract

The asymmetric unit of the title compound, 2C2H6N5(+)·C4O4(2-), contains two 3,5-diamino-4H-1,2,4-triazolium cations and one squarate dianion. The squaric acid mol-ecule donated one H atom to each of the two 3,5-diamino-1,2,4-triazole mol-ecules at their N atoms. The squaric acid dianion has four C-O bonds which are shorter than a normal single C-O bond (1.426 Å) and are slightly longer than a normal C=O bond (1.23 Å), which indicates the degree of electron delocalization in the dianion. In the crystal, the cations and dianions are linked by N-H⋯N and N-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2013        PMID: 23476545      PMCID: PMC3588514          DOI: 10.1107/S160053681300322X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the acid–base chemistry of squarate acid, see: Mathew et al. (2002 ▶); Frankenbach et al. (1992 ▶); Yeşilel et al. (2008 ▶); Bertolasi et al. (2001 ▶); Correa et al. (2007 ▶). For a related structure, see: Uçar et al. (2004 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

2C2H6N5C4O4 2− M = 312.28 Monoclinic, a = 15.7186 (2) Å b = 11.6533 (2) Å c = 6.8618 (1) Å β = 91.734 (1)° V = 1256.32 (3) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 100 K 0.44 × 0.20 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.943, T max = 0.982 19113 measured reflections 4965 independent reflections 3911 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.108 S = 1.03 4965 reflections 247 parameters All H-atom parameters refined Δρmax = 0.43 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681300322X/rz5040sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300322X/rz5040Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681300322X/rz5040Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C2H6N5+·C4O42F(000) = 648
Mr = 312.28Dx = 1.651 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7050 reflections
a = 15.7186 (2) Åθ = 2.2–33.7°
b = 11.6533 (2) ŵ = 0.14 mm1
c = 6.8618 (1) ÅT = 100 K
β = 91.734 (1)°Block, colourless
V = 1256.32 (3) Å30.44 × 0.20 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer4965 independent reflections
Radiation source: fine-focus sealed tube3911 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
φ and ω scansθmax = 33.7°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −24→23
Tmin = 0.943, Tmax = 0.982k = −18→12
19113 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108All H-atom parameters refined
S = 1.03w = 1/[σ2(Fo2) + (0.0597P)2 + 0.1328P] where P = (Fo2 + 2Fc2)/3
4965 reflections(Δ/σ)max = 0.001
247 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.32 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.21331 (4)1.07699 (5)0.54430 (10)0.01452 (13)
O20.37416 (4)0.94620 (5)0.36357 (10)0.01592 (14)
O30.29531 (4)0.70043 (5)0.48973 (11)0.01665 (14)
O40.13065 (4)0.82957 (5)0.65486 (10)0.01628 (14)
C10.23528 (5)0.97349 (7)0.52898 (13)0.01176 (15)
C20.30810 (5)0.91452 (7)0.44836 (13)0.01202 (15)
C30.27269 (5)0.80280 (7)0.50302 (13)0.01267 (16)
C40.19890 (5)0.86217 (7)0.57988 (13)0.01233 (16)
N1A−0.07849 (5)0.38750 (6)0.31736 (11)0.01324 (15)
N2A−0.06499 (5)0.57809 (6)0.31893 (11)0.01364 (15)
N3A0.00592 (5)0.52443 (6)0.23974 (12)0.01388 (15)
N4A−0.19073 (5)0.49920 (7)0.44806 (13)0.01773 (17)
N5A0.05462 (5)0.33657 (7)0.17618 (13)0.01821 (17)
C5A−0.11444 (5)0.49176 (7)0.36330 (13)0.01248 (16)
C6A−0.00190 (5)0.41097 (7)0.24079 (13)0.01293 (16)
N1B0.58254 (5)0.65997 (6)0.21916 (11)0.01269 (14)
N2B0.57382 (5)0.84985 (6)0.24748 (12)0.01463 (15)
N3B0.49823 (5)0.79658 (6)0.29850 (12)0.01433 (15)
N4B0.70576 (5)0.77532 (7)0.14462 (12)0.01499 (15)
N5B0.44176 (5)0.60870 (7)0.31739 (13)0.01730 (16)
C5B0.62343 (5)0.76414 (7)0.20276 (13)0.01231 (16)
C6B0.50327 (5)0.68311 (7)0.27941 (13)0.01274 (16)
H1N1−0.1018 (10)0.3160 (14)0.327 (2)0.040 (4)*
H1N30.0528 (9)0.5685 (13)0.204 (2)0.032 (4)*
H1N4−0.2223 (9)0.4367 (13)0.460 (2)0.037 (4)*
H2N4−0.2172 (9)0.5679 (13)0.456 (2)0.033 (4)*
H1N50.0480 (9)0.2572 (13)0.186 (2)0.037 (4)*
H2N50.1053 (10)0.3664 (13)0.134 (2)0.039 (4)*
H2N10.6019 (10)0.5916 (13)0.193 (2)0.037 (4)*
H2N30.4496 (9)0.8444 (13)0.323 (2)0.037 (4)*
H3N40.7334 (8)0.7088 (12)0.112 (2)0.028 (3)*
H4N40.7362 (8)0.8208 (11)0.2184 (19)0.028 (3)*
H3N50.4482 (9)0.5311 (13)0.295 (2)0.039 (4)*
H4N50.3877 (10)0.6390 (14)0.371 (2)0.044 (4)*
U11U22U33U12U13U23
O10.0142 (3)0.0081 (2)0.0215 (3)0.0007 (2)0.0043 (2)−0.0010 (2)
O20.0124 (3)0.0102 (3)0.0256 (4)−0.0002 (2)0.0086 (2)0.0010 (2)
O30.0149 (3)0.0082 (3)0.0272 (4)0.0016 (2)0.0067 (2)0.0004 (2)
O40.0124 (3)0.0103 (3)0.0267 (4)−0.0010 (2)0.0088 (2)−0.0001 (2)
C10.0109 (3)0.0092 (3)0.0154 (4)−0.0008 (3)0.0023 (3)−0.0004 (3)
C20.0105 (3)0.0092 (3)0.0165 (4)−0.0001 (3)0.0030 (3)0.0002 (3)
C30.0115 (3)0.0098 (3)0.0168 (4)−0.0001 (3)0.0032 (3)0.0005 (3)
C40.0115 (3)0.0091 (3)0.0166 (4)−0.0002 (3)0.0035 (3)−0.0002 (3)
N1A0.0128 (3)0.0090 (3)0.0182 (4)−0.0020 (2)0.0044 (3)0.0001 (3)
N2A0.0124 (3)0.0107 (3)0.0180 (4)−0.0002 (2)0.0043 (3)−0.0002 (3)
N3A0.0130 (3)0.0091 (3)0.0198 (4)−0.0011 (2)0.0053 (3)0.0010 (3)
N4A0.0149 (4)0.0120 (3)0.0268 (5)−0.0015 (3)0.0091 (3)−0.0011 (3)
N5A0.0152 (4)0.0103 (3)0.0297 (5)−0.0001 (3)0.0101 (3)0.0001 (3)
C5A0.0131 (4)0.0102 (3)0.0143 (4)−0.0008 (3)0.0021 (3)0.0000 (3)
C6A0.0132 (4)0.0102 (3)0.0156 (4)−0.0014 (3)0.0034 (3)0.0009 (3)
N1B0.0120 (3)0.0091 (3)0.0172 (4)0.0013 (2)0.0036 (3)−0.0021 (3)
N2B0.0129 (3)0.0115 (3)0.0198 (4)0.0000 (3)0.0055 (3)−0.0004 (3)
N3B0.0118 (3)0.0097 (3)0.0217 (4)0.0009 (2)0.0050 (3)−0.0017 (3)
N4B0.0132 (3)0.0134 (3)0.0186 (4)0.0002 (3)0.0043 (3)−0.0025 (3)
N5B0.0131 (3)0.0121 (3)0.0271 (4)−0.0007 (3)0.0062 (3)−0.0037 (3)
C5B0.0139 (4)0.0105 (3)0.0127 (4)0.0004 (3)0.0027 (3)−0.0006 (3)
C6B0.0127 (4)0.0106 (3)0.0150 (4)0.0010 (3)0.0020 (3)−0.0012 (3)
O1—C11.2599 (10)N4A—H2N40.904 (15)
O2—C21.2608 (10)N5A—C6A1.3272 (12)
O3—C31.2490 (10)N5A—H1N50.934 (15)
O4—C41.2622 (10)N5A—H2N50.922 (15)
C1—C21.4582 (12)N1B—C6B1.3517 (11)
C1—C41.4642 (11)N1B—C5B1.3798 (11)
C2—C31.4690 (12)N1B—H2N10.873 (15)
C3—C41.4627 (12)N2B—C5B1.3092 (11)
N1A—C6A1.3559 (11)N2B—N3B1.3947 (10)
N1A—C5A1.3805 (11)N3B—C6B1.3313 (11)
N1A—H1N10.913 (16)N3B—H2N30.965 (15)
N2A—C5A1.3127 (11)N4B—C5B1.3719 (12)
N2A—N3A1.4020 (11)N4B—H3N40.919 (14)
N3A—C6A1.3280 (11)N4B—H4N40.867 (13)
N3A—H1N30.937 (15)N5B—C6B1.3305 (11)
N4A—C5A1.3513 (12)N5B—H3N50.922 (15)
N4A—H1N40.887 (16)N5B—H4N51.001 (15)
O1—C1—C2134.67 (8)N2A—C5A—N4A126.16 (8)
O1—C1—C4135.90 (8)N2A—C5A—N1A111.86 (8)
C2—C1—C489.41 (6)N4A—C5A—N1A121.97 (8)
O2—C2—C1134.74 (8)N5A—C6A—N3A125.85 (8)
O2—C2—C3134.50 (8)N5A—C6A—N1A127.51 (8)
C1—C2—C390.75 (7)N3A—C6A—N1A106.64 (8)
O3—C3—C4135.13 (8)C6B—N1B—C5B106.58 (7)
O3—C3—C2135.81 (8)C6B—N1B—H2N1125.0 (10)
C4—C3—C289.06 (6)C5B—N1B—H2N1128.4 (10)
O4—C4—C3134.24 (8)C5B—N2B—N3B103.72 (7)
O4—C4—C1134.98 (8)C6B—N3B—N2B111.33 (7)
C3—C4—C190.76 (7)C6B—N3B—H2N3129.8 (9)
C6A—N1A—C5A106.58 (7)N2B—N3B—H2N3118.2 (9)
C6A—N1A—H1N1125.0 (10)C5B—N4B—H3N4116.6 (8)
C5A—N1A—H1N1128.3 (10)C5B—N4B—H4N4113.4 (8)
C5A—N2A—N3A103.37 (7)H3N4—N4B—H4N4113.5 (11)
C6A—N3A—N2A111.54 (7)C6B—N5B—H3N5121.5 (9)
C6A—N3A—H1N3128.4 (9)C6B—N5B—H4N5118.2 (9)
N2A—N3A—H1N3119.8 (9)H3N5—N5B—H4N5120.3 (13)
C5A—N4A—H1N4119.5 (10)N2B—C5B—N4B124.71 (8)
C5A—N4A—H2N4119.9 (9)N2B—C5B—N1B111.71 (8)
H1N4—N4A—H2N4117.5 (13)N4B—C5B—N1B123.58 (8)
C6A—N5A—H1N5123.2 (9)N5B—C6B—N3B125.61 (8)
C6A—N5A—H2N5116.8 (10)N5B—C6B—N1B127.73 (8)
H1N5—N5A—H2N5119.6 (13)N3B—C6B—N1B106.64 (7)
O1—C1—C2—O2−1.04 (18)N3A—N2A—C5A—N4A178.72 (9)
C4—C1—C2—O2177.98 (11)N3A—N2A—C5A—N1A0.26 (9)
O1—C1—C2—C3179.83 (10)C6A—N1A—C5A—N2A0.32 (10)
C4—C1—C2—C3−1.15 (7)C6A—N1A—C5A—N4A−178.20 (8)
O2—C2—C3—O31.85 (19)N2A—N3A—C6A—N5A−179.82 (9)
C1—C2—C3—O3−179.02 (11)N2A—N3A—C6A—N1A1.01 (10)
O2—C2—C3—C4−177.99 (11)C5A—N1A—C6A—N5A−179.95 (9)
C1—C2—C3—C41.15 (7)C5A—N1A—C6A—N3A−0.80 (10)
O3—C3—C4—O4−2.60 (18)C5B—N2B—N3B—C6B−1.43 (10)
C2—C3—C4—O4177.24 (10)N3B—N2B—C5B—N4B−179.41 (8)
O3—C3—C4—C1179.02 (11)N3B—N2B—C5B—N1B1.21 (10)
C2—C3—C4—C1−1.14 (7)C6B—N1B—C5B—N2B−0.61 (10)
O1—C1—C4—O41.79 (19)C6B—N1B—C5B—N4B180.00 (8)
C2—C1—C4—O4−177.21 (11)N2B—N3B—C6B—N5B179.79 (9)
O1—C1—C4—C3−179.85 (11)N2B—N3B—C6B—N1B1.09 (10)
C2—C1—C4—C31.15 (7)C5B—N1B—C6B—N5B−178.98 (9)
C5A—N2A—N3A—C6A−0.80 (9)C5B—N1B—C6B—N3B−0.32 (9)
D—H···AD—HH···AD···AD—H···A
N1A—H1N1···O4i0.913 (16)1.761 (16)2.6677 (9)171.3 (15)
N3A—H1N3···O4ii0.937 (15)1.746 (15)2.6734 (10)170.2 (14)
N4A—H1N4···O3i0.887 (15)2.003 (15)2.8877 (10)175.2 (13)
N4A—H2N4···N4Biii0.904 (15)2.565 (15)3.3917 (12)152.3 (12)
N5A—H1N5···N2Aiv0.933 (15)2.105 (15)3.0167 (11)165.3 (13)
N5A—H2N5···O1ii0.922 (15)1.940 (15)2.8621 (11)177.7 (14)
N1B—H2N1···O2v0.874 (15)1.781 (15)2.6485 (9)171.8 (15)
N3B—H2N3···O20.965 (15)1.706 (15)2.6637 (10)171.2 (14)
N4B—H3N4···O1v0.920 (14)2.065 (14)2.9564 (10)162.8 (12)
N4B—H4N4···O1vi0.867 (13)2.150 (13)2.9954 (10)164.9 (12)
N5B—H3N5···N2Bv0.923 (15)2.159 (15)3.0579 (11)164.3 (12)
N5B—H4N5···O31.001 (16)1.832 (15)2.8293 (10)174.2 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1A—H1N1⋯O4i 0.913 (16)1.761 (16)2.6677 (9)171.3 (15)
N3A—H1N3⋯O4ii 0.937 (15)1.746 (15)2.6734 (10)170.2 (14)
N4A—H1N4⋯O3i 0.887 (15)2.003 (15)2.8877 (10)175.2 (13)
N4A—H2N4⋯N4B iii 0.904 (15)2.565 (15)3.3917 (12)152.3 (12)
N5A—H1N5⋯N2A iv 0.933 (15)2.105 (15)3.0167 (11)165.3 (13)
N5A—H2N5⋯O1ii 0.922 (15)1.940 (15)2.8621 (11)177.7 (14)
N1B—H2N1⋯O2v 0.874 (15)1.781 (15)2.6485 (9)171.8 (15)
N3B—H2N3⋯O20.965 (15)1.706 (15)2.6637 (10)171.2 (14)
N4B—H3N4⋯O1v 0.920 (14)2.065 (14)2.9564 (10)162.8 (12)
N4B—H4N4⋯O1vi 0.867 (13)2.150 (13)2.9954 (10)164.9 (12)
N5B—H3N5⋯N2B v 0.923 (15)2.159 (15)3.0579 (11)164.3 (12)
N5B—H4N5⋯O31.001 (16)1.832 (15)2.8293 (10)174.2 (12)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  General rules for the packing of hydrogen-bonded crystals as derived from the analysis of squaric acid anions: aminoaromatic nitrogen base co-crystals.

Authors:  V Bertolasi; P Gilli; V Ferretti; G Gilli
Journal:  Acta Crystallogr B       Date:  2001-07-25

3.  Picolinamidium squarate and di-p-toluidinium squarate dihydrate.

Authors:  Ibrahim Uçar; Ahmet Bulut; Okan Zafer Yeşilel; Orhan Büyükgüngör
Journal:  Acta Crystallogr C       Date:  2004-07-21       Impact factor: 1.172

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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