Literature DB >> 23476542

2-(4-Oxo-3-phenyl-1,3-thia-zolidin-2-yl-idene)malononitrile.

Ola K Sakka1, Daisy H Fleita, William T A Harrison.   

Abstract

In the title compound, C12H7N3OS, the essentially planar thia-zole ring (r.m.s. deviation = 0.022 Å) forms dihedral angles of 84.88 (9) and 1.8 (3)° with the phenyl ring and the -C(CN)2 group (r.m.s. deviation = 0.003 Å), respectively. The mol-ecule has approximate local Cs symmetry. In the crystal, molecules are linked via C-H⋯N hydrogen bonds, forming chains propagating along [101]. The crystal studied was found to be an inversion twin with a refined 0.63 (1):0.37 (1) domain ratio.

Entities:  

Year:  2013        PMID: 23476542      PMCID: PMC3588553          DOI: 10.1107/S160053681300216X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 1,3-thia­zolidin-4-ones and their properties, see: Singh et al. (1981 ▶); Liesen et al. (2010 ▶); Kocabalkanli et al. (2001 ▶); Kumar et al. (2007 ▶). For further synthetic details, see: Mohareb et al. (2012 ▶). For a related structure, see: Pomés Hernández et al. (1996 ▶).

Experimental

Crystal data

C12H7N3OS M = 241.27 Monoclinic, a = 17.0305 (8) Å b = 9.5638 (6) Å c = 7.1651 (4) Å β = 104.199 (4)° V = 1131.37 (11) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 298 K 0.20 × 0.13 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer 2136 measured reflections 2136 independent reflections 1397 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.086 S = 1.01 2136 reflections 156 parameters 2 restraints H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 835 Friedel pairs Flack parameter: 0.37 (1) Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶), SCALEPACK and SORTAV (Blessing, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681300216X/lh5577sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300216X/lh5577Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681300216X/lh5577Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H7N3OSF(000) = 496
Mr = 241.27Dx = 1.416 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 1133 reflections
a = 17.0305 (8) Åθ = 2.9–27.5°
b = 9.5638 (6) ŵ = 0.27 mm1
c = 7.1651 (4) ÅT = 298 K
β = 104.199 (4)°Block, yellow
V = 1131.37 (11) Å30.20 × 0.13 × 0.05 mm
Z = 4
Nonius KappaCCD diffractometer1397 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
Graphite monochromatorθmax = 27.5°, θmin = 3.6°
ω scansh = −21→22
2136 measured reflectionsk = −12→11
2136 independent reflectionsl = −9→9
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.043w = 1/[σ2(Fo2) + (0.0223P)2 + 0.0674P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.086(Δ/σ)max < 0.001
S = 1.01Δρmax = 0.17 e Å3
2136 reflectionsΔρmin = −0.18 e Å3
156 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.008 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 835 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.37 (1)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.40086 (17)0.3723 (3)0.3314 (5)0.0435 (8)
C20.31911 (18)0.3591 (4)0.3709 (4)0.0542 (9)
H2A0.28270.31040.26570.065*
H2B0.29690.45110.38300.065*
C30.43425 (18)0.2567 (3)0.6297 (4)0.0357 (7)
C40.48151 (17)0.1984 (3)0.7933 (4)0.0395 (8)
C50.4414 (2)0.1387 (4)0.9303 (5)0.0487 (8)
C60.5676 (2)0.1857 (3)0.8434 (5)0.0444 (8)
C70.54465 (17)0.3210 (3)0.4754 (4)0.0368 (7)
C80.58860 (18)0.4396 (4)0.5395 (4)0.0465 (8)
H80.56500.51430.58840.056*
C90.6685 (2)0.4455 (5)0.5297 (5)0.0669 (11)
H90.69940.52420.57460.080*
C100.7026 (2)0.3359 (5)0.4543 (5)0.0689 (13)
H100.75630.34110.44700.083*
C110.6581 (2)0.2197 (5)0.3901 (5)0.0657 (12)
H110.68160.14560.33940.079*
C120.5784 (2)0.2111 (4)0.3998 (4)0.0534 (10)
H120.54800.13180.35570.064*
S10.32943 (5)0.26310 (9)0.59038 (11)0.0515 (3)
O10.41623 (12)0.4253 (2)0.1924 (3)0.0585 (7)
N10.46104 (13)0.3139 (3)0.4828 (3)0.0363 (6)
N20.40992 (18)0.0906 (3)1.0384 (5)0.0703 (9)
N30.63584 (18)0.1710 (3)0.8969 (4)0.0671 (9)
U11U22U33U12U13U23
C10.0331 (18)0.039 (2)0.0570 (19)−0.0008 (15)0.0092 (15)−0.0014 (17)
C20.036 (2)0.071 (3)0.0535 (19)0.0005 (17)0.0065 (14)0.0031 (18)
C30.0287 (16)0.0350 (19)0.0452 (17)−0.0036 (15)0.0126 (13)−0.0012 (14)
C40.0327 (18)0.042 (2)0.0459 (19)0.0010 (14)0.0142 (15)0.0074 (15)
C50.0362 (19)0.050 (2)0.0577 (19)0.0011 (16)0.0074 (16)0.0099 (17)
C60.040 (2)0.048 (2)0.0461 (17)−0.0002 (16)0.0109 (14)0.0044 (17)
C70.0283 (17)0.045 (2)0.0386 (17)−0.0005 (15)0.0110 (13)0.0027 (15)
C80.042 (2)0.051 (2)0.0490 (18)−0.0055 (17)0.0144 (14)−0.0015 (16)
C90.047 (2)0.095 (3)0.060 (2)−0.020 (2)0.0139 (18)0.007 (2)
C100.030 (2)0.122 (4)0.057 (2)0.003 (2)0.0147 (16)0.012 (2)
C110.046 (2)0.098 (3)0.057 (2)0.026 (2)0.0199 (19)0.003 (2)
C120.049 (2)0.057 (3)0.052 (2)0.0062 (18)0.0080 (17)−0.0045 (15)
S10.0288 (4)0.0603 (6)0.0661 (5)−0.0030 (5)0.0131 (3)0.0097 (5)
O10.0528 (15)0.0679 (18)0.0571 (13)0.0059 (12)0.0178 (10)0.0173 (13)
N10.0280 (14)0.0374 (16)0.0442 (14)−0.0027 (11)0.0103 (11)0.0005 (12)
N20.0528 (19)0.085 (3)0.076 (2)−0.0039 (18)0.0208 (15)0.030 (2)
N30.040 (2)0.092 (3)0.067 (2)0.0083 (17)0.0091 (15)0.0192 (18)
C1—O11.202 (3)C7—C121.372 (4)
C1—N11.412 (4)C7—C81.374 (4)
C1—C21.492 (4)C7—N11.439 (3)
C2—S11.792 (3)C8—C91.381 (4)
C2—H2A0.9700C8—H80.9300
C2—H2B0.9700C9—C101.372 (6)
C3—N11.361 (4)C9—H90.9300
C3—C41.367 (4)C10—C111.361 (5)
C3—S11.739 (3)C10—H100.9300
C4—C61.426 (4)C11—C121.378 (5)
C4—C51.444 (5)C11—H110.9300
C5—N21.142 (4)C12—H120.9300
C6—N31.140 (4)
O1—C1—N1122.6 (3)C7—C8—C9118.7 (3)
O1—C1—C2126.5 (3)C7—C8—H8120.7
N1—C1—C2110.9 (3)C9—C8—H8120.7
C1—C2—S1108.3 (2)C10—C9—C8120.5 (4)
C1—C2—H2A110.0C10—C9—H9119.8
S1—C2—H2A110.0C8—C9—H9119.8
C1—C2—H2B110.0C11—C10—C9120.1 (4)
S1—C2—H2B110.0C11—C10—H10119.9
H2A—C2—H2B108.4C9—C10—H10119.9
N1—C3—C4126.1 (3)C10—C11—C12120.4 (4)
N1—C3—S1112.7 (2)C10—C11—H11119.8
C4—C3—S1121.2 (2)C12—C11—H11119.8
C3—C4—C6127.1 (2)C7—C12—C11119.2 (4)
C3—C4—C5117.8 (3)C7—C12—H12120.4
C6—C4—C5115.1 (3)C11—C12—H12120.4
N2—C5—C4179.5 (4)C3—S1—C292.06 (15)
N3—C6—C4174.6 (3)C3—N1—C1115.8 (2)
C12—C7—C8121.1 (3)C3—N1—C7124.7 (2)
C12—C7—N1119.5 (3)C1—N1—C7119.4 (2)
C8—C7—N1119.3 (3)
D—H···AD—HH···AD···AD—H···A
C10—H10···N2i0.932.623.504 (5)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10⋯N2i 0.932.623.504 (5)159

Symmetry code: (i) .

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