Literature DB >> 23476529

1-Phenyl-2-p-tolyl-1H-benzimidazole.

T Mohandas1, K Jayamoorthy, P Sakthivel, J Jayabharathi.   

Abstract

In the title compound, C20H16N2, the benzimidazole ring system forms dihedral angles of 28.50 (7) and 72.44 (7)° with the tolyl and phenyl rings, respectively. In the crystal, mol-ecules are linked into chains along the a-axis direction by weak C-H⋯N inter-actions. The crystal structure also features C-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 23476529      PMCID: PMC3588497          DOI: 10.1107/S160053681300264X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of benzimidazole derivatives, see: Fang et al. (2007 ▶); Ge et al. (2008 ▶); Lai et al. (2008 ▶); Shin et al. (2007 ▶). For their biological activity, see: Garuti et al. (1999 ▶); Matsuno et al. (2000 ▶) and for their therapeutic applications, see: Can-Eke et al. (1998 ▶); Richter (1997 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C20H16N2 M = 284.35 Orthorhombic, a = 15.6755 (4) Å b = 9.3509 (6) Å c = 21.1976 (8) Å V = 3107.1 (2) Å3 Z = 8 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.30 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.966, T max = 0.997 15284 measured reflections 2523 independent reflections 1840 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.103 S = 1.01 2523 reflections 201 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.11 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681300264X/fy2081sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300264X/fy2081Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681300264X/fy2081Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N2F(000) = 1200
Mr = 284.35Dx = 1.216 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3879 reflections
a = 15.6755 (4) Åθ = 2.7–22.5°
b = 9.3509 (6) ŵ = 0.07 mm1
c = 21.1976 (8) ÅT = 293 K
V = 3107.1 (2) Å3Block, colourless
Z = 80.30 × 0.30 × 0.25 mm
Bruker Kappa APEXII diffractometer2523 independent reflections
Radiation source: rotating anode1840 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
Detector resolution: 18.4 pixels mm-1θmax = 24.3°, θmin = 2.3°
ω and φ scanh = −18→13
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −8→10
Tmin = 0.966, Tmax = 0.997l = −24→18
15284 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0474P)2 + 0.5482P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2523 reflectionsΔρmax = 0.12 e Å3
201 parametersΔρmin = −0.11 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0073 (6)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.14753 (9)−0.13901 (15)0.07038 (6)0.0552 (5)
N20.09742 (9)0.08161 (13)0.08884 (6)0.0487 (5)
C10.12646 (10)−0.12606 (18)0.13367 (8)0.0531 (6)
C20.13195 (12)−0.2254 (2)0.18248 (9)0.0672 (7)
C30.10524 (14)−0.1835 (2)0.24119 (9)0.0743 (8)
C40.07406 (13)−0.0470 (2)0.25226 (9)0.0751 (8)
C50.06882 (11)0.0531 (2)0.20511 (8)0.0641 (7)
C60.09523 (10)0.01008 (17)0.14593 (7)0.0507 (6)
C70.12994 (9)−0.01370 (17)0.04511 (7)0.0472 (6)
C80.14252 (10)0.01833 (17)−0.02203 (7)0.0470 (5)
C90.09213 (11)0.11433 (17)−0.05513 (8)0.0536 (6)
C100.10375 (12)0.13481 (18)−0.11886 (8)0.0569 (6)
C110.16546 (11)0.06158 (19)−0.15234 (8)0.0562 (6)
C120.21529 (11)−0.0342 (2)−0.11910 (8)0.0647 (7)
C130.20433 (11)−0.05620 (19)−0.05528 (8)0.0597 (7)
C140.17583 (14)0.0840 (2)−0.22227 (9)0.0782 (8)
C150.07647 (10)0.22994 (17)0.08275 (7)0.0473 (6)
C160.14063 (13)0.32822 (19)0.07561 (8)0.0615 (7)
C170.12051 (17)0.4708 (2)0.07146 (9)0.0791 (9)
C180.03838 (19)0.5144 (2)0.07484 (9)0.0793 (9)
C19−0.02647 (15)0.4162 (2)0.08192 (8)0.0741 (8)
C20−0.00744 (12)0.2715 (2)0.08613 (7)0.0586 (7)
H20.15302−0.316980.175460.0806*
H30.10809−0.248200.274440.0892*
H40.05623−0.022660.292710.0901*
H50.048560.145040.212590.0769*
H90.049990.16546−0.034030.0642*
H100.069090.19980−0.139970.0683*
H120.25734−0.08529−0.140340.0777*
H130.23879−0.12174−0.034320.0717*
H14A0.123720.05913−0.243380.1173*
H14B0.221260.02453−0.237620.1173*
H14C0.189150.18246−0.230390.1173*
H160.197210.298630.073590.0738*
H170.163710.537920.066280.0949*
H180.025580.611340.072370.0949*
H19−0.082860.446760.083860.0889*
H20−0.050580.204150.091140.0703*
U11U22U33U12U13U23
N10.0569 (9)0.0543 (9)0.0543 (9)0.0053 (7)−0.0008 (7)0.0016 (7)
N20.0514 (8)0.0480 (8)0.0466 (8)−0.0015 (6)0.0053 (6)−0.0017 (6)
C10.0496 (10)0.0571 (11)0.0526 (11)−0.0049 (8)−0.0022 (8)0.0039 (8)
C20.0721 (13)0.0649 (12)0.0646 (12)−0.0018 (10)−0.0062 (10)0.0113 (10)
C30.0794 (14)0.0847 (15)0.0589 (13)−0.0093 (12)−0.0015 (10)0.0201 (11)
C40.0791 (14)0.0967 (16)0.0495 (11)−0.0075 (12)0.0088 (9)0.0050 (11)
C50.0679 (13)0.0721 (12)0.0522 (11)−0.0022 (10)0.0083 (9)−0.0026 (9)
C60.0488 (10)0.0558 (10)0.0475 (10)−0.0053 (8)0.0034 (8)0.0010 (8)
C70.0415 (9)0.0499 (10)0.0501 (10)−0.0007 (7)0.0011 (7)−0.0023 (8)
C80.0443 (9)0.0509 (9)0.0459 (9)−0.0013 (7)0.0003 (7)−0.0038 (8)
C90.0544 (11)0.0542 (10)0.0521 (10)0.0055 (8)0.0036 (8)−0.0039 (8)
C100.0615 (11)0.0570 (10)0.0522 (11)0.0019 (9)−0.0021 (8)0.0026 (8)
C110.0537 (11)0.0655 (11)0.0494 (10)−0.0088 (9)0.0029 (8)−0.0034 (9)
C120.0527 (11)0.0859 (13)0.0556 (12)0.0088 (10)0.0074 (8)−0.0126 (10)
C130.0517 (11)0.0727 (12)0.0548 (11)0.0128 (9)−0.0003 (8)−0.0027 (9)
C140.0827 (15)0.0974 (15)0.0545 (12)−0.0074 (12)0.0090 (10)0.0015 (10)
C150.0540 (11)0.0474 (10)0.0404 (9)−0.0020 (8)0.0028 (7)−0.0048 (7)
C160.0659 (12)0.0582 (12)0.0603 (11)−0.0100 (9)0.0070 (9)−0.0054 (9)
C170.112 (2)0.0552 (12)0.0700 (13)−0.0163 (12)0.0153 (12)−0.0064 (10)
C180.131 (2)0.0530 (12)0.0538 (12)0.0133 (14)0.0079 (12)−0.0039 (9)
C190.0857 (15)0.0854 (15)0.0511 (12)0.0331 (13)0.0013 (10)−0.0125 (10)
C200.0570 (12)0.0664 (12)0.0525 (10)0.0050 (9)0.0034 (8)−0.0104 (9)
N1—C11.387 (2)C16—C171.373 (3)
N1—C71.318 (2)C17—C181.352 (4)
N2—C61.383 (2)C18—C191.378 (3)
N2—C71.383 (2)C19—C201.388 (3)
N2—C151.431 (2)C2—H20.9300
C1—C21.393 (3)C3—H30.9300
C1—C61.389 (2)C4—H40.9300
C2—C31.370 (3)C5—H50.9300
C3—C41.387 (3)C9—H90.9300
C4—C51.372 (3)C10—H100.9300
C5—C61.381 (2)C12—H120.9300
C7—C81.468 (2)C13—H130.9300
C8—C91.386 (2)C14—H14A0.9600
C8—C131.386 (2)C14—H14B0.9600
C9—C101.377 (2)C14—H14C0.9600
C10—C111.381 (2)C16—H160.9300
C11—C121.382 (2)C17—H170.9300
C11—C141.506 (3)C18—H180.9300
C12—C131.379 (2)C19—H190.9300
C15—C161.371 (2)C20—H200.9300
C15—C201.373 (2)
C1—N1—C7105.41 (13)C15—C20—C19118.57 (18)
C6—N2—C7106.49 (12)C1—C2—H2121.00
C6—N2—C15122.81 (13)C3—C2—H2121.00
C7—N2—C15130.43 (13)C2—C3—H3119.00
N1—C1—C2130.20 (16)C4—C3—H3119.00
N1—C1—C6110.19 (14)C3—C4—H4119.00
C2—C1—C6119.61 (16)C5—C4—H4119.00
C1—C2—C3117.71 (17)C4—C5—H5122.00
C2—C3—C4121.64 (18)C6—C5—H5122.00
C3—C4—C5121.73 (18)C8—C9—H9120.00
C4—C5—C6116.43 (17)C10—C9—H9120.00
N2—C6—C1105.72 (13)C9—C10—H10119.00
N2—C6—C5131.41 (15)C11—C10—H10119.00
C1—C6—C5122.88 (15)C11—C12—H12119.00
N1—C7—N2112.19 (13)C13—C12—H12119.00
N1—C7—C8123.20 (14)C8—C13—H13120.00
N2—C7—C8124.60 (14)C12—C13—H13120.00
C7—C8—C9123.12 (14)C11—C14—H14A109.00
C7—C8—C13118.97 (14)C11—C14—H14B109.00
C9—C8—C13117.81 (15)C11—C14—H14C109.00
C8—C9—C10120.76 (16)H14A—C14—H14B109.00
C9—C10—C11121.86 (16)H14A—C14—H14C110.00
C10—C11—C12117.08 (16)H14B—C14—H14C109.00
C10—C11—C14120.82 (16)C15—C16—H16120.00
C12—C11—C14122.09 (16)C17—C16—H16120.00
C11—C12—C13121.77 (16)C16—C17—H17120.00
C8—C13—C12120.72 (16)C18—C17—H17120.00
N2—C15—C16119.43 (15)C17—C18—H18120.00
N2—C15—C20119.29 (15)C19—C18—H18120.00
C16—C15—C20121.25 (16)C18—C19—H19120.00
C15—C16—C17119.32 (19)C20—C19—H19120.00
C16—C17—C18120.5 (2)C15—C20—H20121.00
C17—C18—C19120.47 (19)C19—C20—H20121.00
C18—C19—C20119.9 (2)
C7—N1—C1—C2179.96 (18)C4—C5—C6—C1−0.6 (3)
C7—N1—C1—C60.33 (18)C4—C5—C6—N2179.05 (17)
C1—N1—C7—N2−0.49 (17)N2—C7—C8—C13154.00 (15)
C1—N1—C7—C8−179.56 (14)N1—C7—C8—C9149.15 (16)
C6—N2—C7—N10.47 (18)N1—C7—C8—C13−27.1 (2)
C15—N2—C7—N1174.56 (15)N2—C7—C8—C9−29.8 (2)
C6—N2—C15—C16103.65 (18)C13—C8—C9—C10−0.3 (2)
C7—N2—C15—C16−69.6 (2)C7—C8—C13—C12176.83 (16)
C6—N2—C15—C20−74.4 (2)C7—C8—C9—C10−176.52 (16)
C7—N2—C15—C20112.39 (18)C9—C8—C13—C120.4 (3)
C7—N2—C6—C1−0.23 (17)C8—C9—C10—C110.0 (3)
C15—N2—C6—C1−174.88 (14)C9—C10—C11—C120.2 (3)
C7—N2—C6—C5−179.95 (17)C9—C10—C11—C14178.90 (17)
C15—N2—C6—C55.4 (3)C14—C11—C12—C13−178.73 (17)
C6—N2—C7—C8179.52 (14)C10—C11—C12—C13−0.1 (3)
C15—N2—C7—C8−6.4 (3)C11—C12—C13—C8−0.3 (3)
C6—C1—C2—C30.4 (3)N2—C15—C16—C17−178.28 (15)
N1—C1—C6—C5179.69 (15)C20—C15—C16—C17−0.3 (2)
N1—C1—C6—N2−0.06 (19)N2—C15—C20—C19178.20 (14)
N1—C1—C2—C3−179.16 (18)C16—C15—C20—C190.2 (2)
C2—C1—C6—C50.0 (3)C15—C16—C17—C180.5 (3)
C2—C1—C6—N2−179.73 (15)C16—C17—C18—C19−0.6 (3)
C1—C2—C3—C4−0.3 (3)C17—C18—C19—C200.5 (3)
C2—C3—C4—C5−0.4 (3)C18—C19—C20—C15−0.3 (2)
C3—C4—C5—C60.8 (3)
D—H···AD—HH···AD···AD—H···A
C16—H16···N1i0.93002.50003.337 (2)149.00
C20—H20···Cg1ii0.93002.79883.707 (2)165.79
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C15–C20 phenyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C16—H16⋯N1i 0.932.503.337 (2)149
C20—H20⋯Cg1ii 0.932.803.707 (2)166

Symmetry codes: (i) ; (ii) .

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