| Literature DB >> 23476528 |
Jiena Hu1, Yang Wu, Dengqing Zhang, Xianying Li, Wusong Jin.
Abstract
The title compound, C15H12N4O, was synthesized by a standard Suzuki cross-coupling reaction. The terminal pyrim-idine rings are rotated at dihedral angles of 12.06 (4) and -13.13 (4)° with respect to the central benzene ring. In the crystal, the mol-ecules are connected by two kinds of C-H⋯N hydrogen bonds, forming zigzag chains along the c axis. Weak π-π inter-actions between the benzene and one of the pyrimidine rings are also found and stack the mol-ecules along the b axis [centroid-centroid distance = 4.112 (3) Å].Entities:
Year: 2013 PMID: 23476528 PMCID: PMC3588471 DOI: 10.1107/S1600536813002663
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H12N4O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 4404 reflections |
| θ = 4.7–56.5° | |
| µ = 0.09 mm−1 | |
| Prismatic, colourless | |
| 0.28 × 0.21 × 0.07 mm |
| Bruker SMART CCD area-detector diffractometer | 2461 independent reflections |
| Radiation source: fine-focus sealed tube | 2059 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.0°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 14088 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2461 reflections | (Δ/σ)max = 0.001 |
| 182 parameters | Δρmax = 0.16 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 1.03793 (11) | 0.23473 (17) | 0.28017 (4) | 0.0556 (4) | |
| N2 | 1.20879 (9) | 0.20037 (16) | 0.32842 (4) | 0.0508 (3) | |
| N3 | 0.65549 (10) | −0.04972 (17) | 0.43132 (4) | 0.0550 (3) | |
| N4 | 0.65653 (10) | 0.05619 (16) | 0.35048 (4) | 0.0519 (3) | |
| O1 | 1.07030 (9) | −0.16817 (14) | 0.46649 (3) | 0.0572 (3) | |
| C1 | 1.02113 (12) | −0.07963 (17) | 0.42928 (4) | 0.0434 (3) | |
| C2 | 0.89954 (12) | −0.07835 (17) | 0.42817 (5) | 0.0444 (3) | |
| H2 | 0.8574 | −0.1340 | 0.4522 | 0.053* | |
| C3 | 0.84023 (11) | 0.00505 (16) | 0.39159 (4) | 0.0394 (3) | |
| C4 | 0.90336 (11) | 0.08851 (16) | 0.35561 (4) | 0.0387 (3) | |
| H4 | 0.8639 | 0.1440 | 0.3308 | 0.046* | |
| C5 | 1.02519 (11) | 0.08866 (16) | 0.35693 (4) | 0.0380 (3) | |
| C6 | 1.08424 (11) | 0.00412 (16) | 0.39390 (4) | 0.0415 (3) | |
| H6 | 1.1660 | 0.0040 | 0.3948 | 0.050* | |
| C7 | 1.09451 (11) | 0.17957 (16) | 0.31955 (4) | 0.0392 (3) | |
| C8 | 1.10177 (14) | 0.3194 (2) | 0.24815 (6) | 0.0609 (4) | |
| H8 | 1.0644 | 0.3616 | 0.2206 | 0.073* | |
| C9 | 1.21922 (13) | 0.3476 (2) | 0.25355 (6) | 0.0554 (4) | |
| H9 | 1.2626 | 0.4064 | 0.2306 | 0.067* | |
| C10 | 1.26891 (12) | 0.2841 (2) | 0.29482 (6) | 0.0567 (4) | |
| H10 | 1.3490 | 0.3001 | 0.2998 | 0.068* | |
| C11 | 0.70953 (11) | 0.00467 (17) | 0.39113 (4) | 0.0417 (3) | |
| C12 | 0.53848 (13) | −0.0495 (2) | 0.43016 (6) | 0.0627 (5) | |
| H12 | 0.4977 | −0.0875 | 0.4574 | 0.075* | |
| C13 | 0.47587 (13) | 0.0040 (2) | 0.39070 (6) | 0.0609 (4) | |
| H13 | 0.3941 | 0.0056 | 0.3907 | 0.073* | |
| C14 | 0.53930 (13) | 0.0549 (2) | 0.35126 (6) | 0.0589 (4) | |
| H14 | 0.4991 | 0.0905 | 0.3236 | 0.071* | |
| C15 | 1.19460 (14) | −0.1760 (2) | 0.46883 (6) | 0.0639 (5) | |
| H15A | 1.2246 | −0.2221 | 0.4390 | 0.096* | |
| H15B | 1.2177 | −0.2443 | 0.4959 | 0.096* | |
| H15C | 1.2258 | −0.0668 | 0.4732 | 0.096* |
| N1 | 0.0475 (6) | 0.0735 (9) | 0.0457 (6) | −0.0099 (6) | −0.0043 (5) | 0.0165 (6) |
| N2 | 0.0395 (6) | 0.0582 (8) | 0.0548 (7) | −0.0046 (5) | −0.0003 (5) | 0.0092 (6) |
| N3 | 0.0450 (7) | 0.0736 (9) | 0.0466 (7) | −0.0109 (6) | 0.0072 (5) | −0.0010 (6) |
| N4 | 0.0403 (6) | 0.0610 (8) | 0.0542 (7) | 0.0031 (5) | 0.0002 (5) | 0.0046 (6) |
| O1 | 0.0531 (6) | 0.0696 (7) | 0.0491 (6) | 0.0027 (5) | −0.0065 (4) | 0.0201 (5) |
| C1 | 0.0468 (7) | 0.0460 (8) | 0.0375 (6) | 0.0020 (6) | −0.0027 (5) | 0.0030 (6) |
| C2 | 0.0463 (8) | 0.0490 (8) | 0.0378 (6) | −0.0033 (6) | 0.0050 (5) | 0.0046 (6) |
| C3 | 0.0387 (7) | 0.0411 (7) | 0.0383 (6) | −0.0012 (5) | 0.0021 (5) | −0.0037 (5) |
| C4 | 0.0395 (7) | 0.0415 (7) | 0.0352 (6) | 0.0008 (5) | −0.0013 (5) | 0.0001 (5) |
| C5 | 0.0387 (7) | 0.0395 (7) | 0.0357 (6) | −0.0010 (5) | 0.0012 (5) | −0.0027 (5) |
| C6 | 0.0359 (6) | 0.0472 (8) | 0.0414 (7) | 0.0001 (5) | −0.0014 (5) | −0.0003 (6) |
| C7 | 0.0380 (6) | 0.0410 (7) | 0.0385 (6) | −0.0010 (5) | 0.0006 (5) | −0.0021 (5) |
| C8 | 0.0611 (9) | 0.0768 (11) | 0.0449 (8) | −0.0123 (8) | −0.0027 (7) | 0.0170 (8) |
| C9 | 0.0587 (9) | 0.0581 (9) | 0.0495 (8) | −0.0128 (7) | 0.0122 (6) | 0.0053 (7) |
| C10 | 0.0397 (7) | 0.0626 (10) | 0.0677 (10) | −0.0083 (7) | 0.0078 (6) | 0.0072 (8) |
| C11 | 0.0400 (7) | 0.0425 (7) | 0.0426 (7) | −0.0017 (5) | 0.0036 (5) | −0.0050 (6) |
| C12 | 0.0465 (8) | 0.0834 (12) | 0.0582 (9) | −0.0140 (8) | 0.0140 (7) | −0.0097 (8) |
| C13 | 0.0356 (7) | 0.0702 (11) | 0.0768 (11) | −0.0021 (7) | 0.0063 (7) | −0.0170 (9) |
| C14 | 0.0416 (8) | 0.0652 (10) | 0.0699 (10) | 0.0051 (7) | −0.0055 (7) | −0.0001 (8) |
| C15 | 0.0553 (9) | 0.0735 (11) | 0.0628 (9) | 0.0086 (8) | −0.0128 (7) | 0.0178 (8) |
| N1—C8 | 1.3280 (18) | C4—H4 | 0.9300 |
| N1—C7 | 1.3316 (17) | C5—C6 | 1.3934 (17) |
| N2—C10 | 1.3310 (18) | C5—C7 | 1.4859 (17) |
| N2—C7 | 1.3333 (16) | C6—H6 | 0.9300 |
| N3—C12 | 1.3317 (19) | C8—C9 | 1.364 (2) |
| N3—C11 | 1.3338 (16) | C8—H8 | 0.9300 |
| N4—C11 | 1.3311 (17) | C9—C10 | 1.363 (2) |
| N4—C14 | 1.3340 (18) | C9—H9 | 0.9300 |
| O1—C1 | 1.3643 (15) | C10—H10 | 0.9300 |
| O1—C15 | 1.4171 (18) | C12—C13 | 1.363 (2) |
| C1—C6 | 1.3821 (18) | C12—H12 | 0.9300 |
| C1—C2 | 1.3838 (18) | C13—C14 | 1.361 (2) |
| C2—C3 | 1.3826 (18) | C13—H13 | 0.9300 |
| C2—H2 | 0.9300 | C14—H14 | 0.9300 |
| C3—C4 | 1.3928 (17) | C15—H15A | 0.9600 |
| C3—C11 | 1.4872 (18) | C15—H15B | 0.9600 |
| C4—C5 | 1.3867 (17) | C15—H15C | 0.9600 |
| C8—N1—C7 | 116.21 (12) | N1—C8—H8 | 118.3 |
| C10—N2—C7 | 116.10 (12) | C9—C8—H8 | 118.3 |
| C12—N3—C11 | 116.16 (13) | C10—C9—C8 | 115.66 (13) |
| C11—N4—C14 | 115.93 (12) | C10—C9—H9 | 122.2 |
| C1—O1—C15 | 117.79 (11) | C8—C9—H9 | 122.2 |
| O1—C1—C6 | 124.49 (12) | N2—C10—C9 | 123.39 (13) |
| O1—C1—C2 | 115.47 (11) | N2—C10—H10 | 118.3 |
| C6—C1—C2 | 120.03 (11) | C9—C10—H10 | 118.3 |
| C3—C2—C1 | 120.49 (12) | N4—C11—N3 | 125.60 (12) |
| C3—C2—H2 | 119.8 | N4—C11—C3 | 117.35 (11) |
| C1—C2—H2 | 119.8 | N3—C11—C3 | 117.04 (11) |
| C2—C3—C4 | 119.74 (12) | N3—C12—C13 | 122.78 (14) |
| C2—C3—C11 | 119.55 (11) | N3—C12—H12 | 118.6 |
| C4—C3—C11 | 120.71 (11) | C13—C12—H12 | 118.6 |
| C5—C4—C3 | 119.83 (11) | C14—C13—C12 | 116.48 (14) |
| C5—C4—H4 | 120.1 | C14—C13—H13 | 121.8 |
| C3—C4—H4 | 120.1 | C12—C13—H13 | 121.8 |
| C4—C5—C6 | 120.04 (11) | N4—C14—C13 | 123.02 (15) |
| C4—C5—C7 | 120.87 (11) | N4—C14—H14 | 118.5 |
| C6—C5—C7 | 119.09 (11) | C13—C14—H14 | 118.5 |
| C1—C6—C5 | 119.87 (12) | O1—C15—H15A | 109.5 |
| C1—C6—H6 | 120.1 | O1—C15—H15B | 109.5 |
| C5—C6—H6 | 120.1 | H15A—C15—H15B | 109.5 |
| N1—C7—N2 | 125.18 (12) | O1—C15—H15C | 109.5 |
| N1—C7—C5 | 117.74 (11) | H15A—C15—H15C | 109.5 |
| N2—C7—C5 | 117.07 (11) | H15B—C15—H15C | 109.5 |
| N1—C8—C9 | 123.44 (14) | ||
| C15—O1—C1—C6 | −0.5 (2) | C6—C5—C7—N1 | 168.58 (12) |
| C15—O1—C1—C2 | 178.92 (13) | C4—C5—C7—N2 | 167.50 (12) |
| O1—C1—C2—C3 | −178.88 (12) | C6—C5—C7—N2 | −11.89 (18) |
| C6—C1—C2—C3 | 0.6 (2) | C7—N1—C8—C9 | 1.4 (2) |
| C1—C2—C3—C4 | −0.05 (19) | N1—C8—C9—C10 | −0.6 (3) |
| C1—C2—C3—C11 | 179.97 (12) | C7—N2—C10—C9 | 0.5 (2) |
| C2—C3—C4—C5 | −0.56 (18) | C8—C9—C10—N2 | −0.4 (2) |
| C11—C3—C4—C5 | 179.41 (11) | C14—N4—C11—N3 | 1.3 (2) |
| C3—C4—C5—C6 | 0.63 (18) | C14—N4—C11—C3 | −179.78 (13) |
| C3—C4—C5—C7 | −178.76 (11) | C12—N3—C11—N4 | −0.9 (2) |
| O1—C1—C6—C5 | 178.91 (12) | C12—N3—C11—C3 | −179.84 (13) |
| C2—C1—C6—C5 | −0.52 (19) | C2—C3—C11—N4 | −166.49 (13) |
| C4—C5—C6—C1 | −0.10 (18) | C4—C3—C11—N4 | 13.54 (18) |
| C7—C5—C6—C1 | 179.31 (12) | C2—C3—C11—N3 | 12.55 (18) |
| C8—N1—C7—N2 | −1.3 (2) | C4—C3—C11—N3 | −167.43 (12) |
| C8—N1—C7—C5 | 178.20 (13) | C11—N3—C12—C13 | −0.5 (2) |
| C10—N2—C7—N1 | 0.4 (2) | N3—C12—C13—C14 | 1.4 (3) |
| C10—N2—C7—C5 | −179.09 (13) | C11—N4—C14—C13 | −0.2 (2) |
| C4—C5—C7—N1 | −12.03 (18) | C12—C13—C14—N4 | −1.0 (2) |
| H··· | ||||
| C9—H9···N4i | 0.93 | 2.69 | 3.597 (2) | 166 |
| C15—H15 | 0.96 | 2.69 | 3.547 (2) | 149 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C9—H9⋯N4i | 0.93 | 2.69 | 3.597 (2) | 166 |
| C15—H15 | 0.96 | 2.69 | 3.547 (2) | 149 |
Symmetry codes: (i) ; (ii) .