Literature DB >> 23476528

2-[3-Meth-oxy-5-(pyrimidin-2-yl)phen-yl]pyrimidine.

Jiena Hu1, Yang Wu, Dengqing Zhang, Xianying Li, Wusong Jin.   

Abstract

The title compound, C15H12N4O, was synthesized by a standard Suzuki cross-coupling reaction. The terminal pyrim-idine rings are rotated at dihedral angles of 12.06 (4) and -13.13 (4)° with respect to the central benzene ring. In the crystal, the mol-ecules are connected by two kinds of C-H⋯N hydrogen bonds, forming zigzag chains along the c axis. Weak π-π inter-actions between the benzene and one of the pyrimidine rings are also found and stack the mol-ecules along the b axis [centroid-centroid distance = 4.112 (3) Å].

Entities:  

Year:  2013        PMID: 23476528      PMCID: PMC3588471          DOI: 10.1107/S1600536813002663

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemistry of tridentate NCN ligands, see: Pugh & Danopoulos (2007 ▶); Wu et al. (2009 ▶, 2012 ▶); Williams (2009 ▶); Wang et al. (2010 ▶). For the synthesis of the title compound, see: Avitia et al. (2011 ▶); Wakioka et al. (2010 ▶); Cardenas & Echavarren (1999 ▶).

Experimental

Crystal data

C15H12N4O M = 264.29 Orthorhombic, a = 11.3779 (8) Å b = 8.0954 (6) Å c = 27.3371 (18) Å V = 2518.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.28 × 0.21 × 0.07 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.800, T max = 1.000 14088 measured reflections 2461 independent reflections 2059 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.123 S = 1.04 2461 reflections 182 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813002663/sj5297sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813002663/sj5297Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813002663/sj5297Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12N4OF(000) = 1104
Mr = 264.29Dx = 1.394 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 4404 reflections
a = 11.3779 (8) Åθ = 4.7–56.5°
b = 8.0954 (6) ŵ = 0.09 mm1
c = 27.3371 (18) ÅT = 293 K
V = 2518.0 (3) Å3Prismatic, colourless
Z = 80.28 × 0.21 × 0.07 mm
Bruker SMART CCD area-detector diffractometer2461 independent reflections
Radiation source: fine-focus sealed tube2059 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
φ and ω scansθmax = 26.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −14→12
Tmin = 0.800, Tmax = 1.000k = −8→9
14088 measured reflectionsl = −33→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0665P)2 + 0.4657P] where P = (Fo2 + 2Fc2)/3
2461 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N11.03793 (11)0.23473 (17)0.28017 (4)0.0556 (4)
N21.20879 (9)0.20037 (16)0.32842 (4)0.0508 (3)
N30.65549 (10)−0.04972 (17)0.43132 (4)0.0550 (3)
N40.65653 (10)0.05619 (16)0.35048 (4)0.0519 (3)
O11.07030 (9)−0.16817 (14)0.46649 (3)0.0572 (3)
C11.02113 (12)−0.07963 (17)0.42928 (4)0.0434 (3)
C20.89954 (12)−0.07835 (17)0.42817 (5)0.0444 (3)
H20.8574−0.13400.45220.053*
C30.84023 (11)0.00505 (16)0.39159 (4)0.0394 (3)
C40.90336 (11)0.08851 (16)0.35561 (4)0.0387 (3)
H40.86390.14400.33080.046*
C51.02519 (11)0.08866 (16)0.35693 (4)0.0380 (3)
C61.08424 (11)0.00412 (16)0.39390 (4)0.0415 (3)
H61.16600.00400.39480.050*
C71.09451 (11)0.17957 (16)0.31955 (4)0.0392 (3)
C81.10177 (14)0.3194 (2)0.24815 (6)0.0609 (4)
H81.06440.36160.22060.073*
C91.21922 (13)0.3476 (2)0.25355 (6)0.0554 (4)
H91.26260.40640.23060.067*
C101.26891 (12)0.2841 (2)0.29482 (6)0.0567 (4)
H101.34900.30010.29980.068*
C110.70953 (11)0.00467 (17)0.39113 (4)0.0417 (3)
C120.53848 (13)−0.0495 (2)0.43016 (6)0.0627 (5)
H120.4977−0.08750.45740.075*
C130.47587 (13)0.0040 (2)0.39070 (6)0.0609 (4)
H130.39410.00560.39070.073*
C140.53930 (13)0.0549 (2)0.35126 (6)0.0589 (4)
H140.49910.09050.32360.071*
C151.19460 (14)−0.1760 (2)0.46883 (6)0.0639 (5)
H15A1.2246−0.22210.43900.096*
H15B1.2177−0.24430.49590.096*
H15C1.2258−0.06680.47320.096*
U11U22U33U12U13U23
N10.0475 (6)0.0735 (9)0.0457 (6)−0.0099 (6)−0.0043 (5)0.0165 (6)
N20.0395 (6)0.0582 (8)0.0548 (7)−0.0046 (5)−0.0003 (5)0.0092 (6)
N30.0450 (7)0.0736 (9)0.0466 (7)−0.0109 (6)0.0072 (5)−0.0010 (6)
N40.0403 (6)0.0610 (8)0.0542 (7)0.0031 (5)0.0002 (5)0.0046 (6)
O10.0531 (6)0.0696 (7)0.0491 (6)0.0027 (5)−0.0065 (4)0.0201 (5)
C10.0468 (7)0.0460 (8)0.0375 (6)0.0020 (6)−0.0027 (5)0.0030 (6)
C20.0463 (8)0.0490 (8)0.0378 (6)−0.0033 (6)0.0050 (5)0.0046 (6)
C30.0387 (7)0.0411 (7)0.0383 (6)−0.0012 (5)0.0021 (5)−0.0037 (5)
C40.0395 (7)0.0415 (7)0.0352 (6)0.0008 (5)−0.0013 (5)0.0001 (5)
C50.0387 (7)0.0395 (7)0.0357 (6)−0.0010 (5)0.0012 (5)−0.0027 (5)
C60.0359 (6)0.0472 (8)0.0414 (7)0.0001 (5)−0.0014 (5)−0.0003 (6)
C70.0380 (6)0.0410 (7)0.0385 (6)−0.0010 (5)0.0006 (5)−0.0021 (5)
C80.0611 (9)0.0768 (11)0.0449 (8)−0.0123 (8)−0.0027 (7)0.0170 (8)
C90.0587 (9)0.0581 (9)0.0495 (8)−0.0128 (7)0.0122 (6)0.0053 (7)
C100.0397 (7)0.0626 (10)0.0677 (10)−0.0083 (7)0.0078 (6)0.0072 (8)
C110.0400 (7)0.0425 (7)0.0426 (7)−0.0017 (5)0.0036 (5)−0.0050 (6)
C120.0465 (8)0.0834 (12)0.0582 (9)−0.0140 (8)0.0140 (7)−0.0097 (8)
C130.0356 (7)0.0702 (11)0.0768 (11)−0.0021 (7)0.0063 (7)−0.0170 (9)
C140.0416 (8)0.0652 (10)0.0699 (10)0.0051 (7)−0.0055 (7)−0.0001 (8)
C150.0553 (9)0.0735 (11)0.0628 (9)0.0086 (8)−0.0128 (7)0.0178 (8)
N1—C81.3280 (18)C4—H40.9300
N1—C71.3316 (17)C5—C61.3934 (17)
N2—C101.3310 (18)C5—C71.4859 (17)
N2—C71.3333 (16)C6—H60.9300
N3—C121.3317 (19)C8—C91.364 (2)
N3—C111.3338 (16)C8—H80.9300
N4—C111.3311 (17)C9—C101.363 (2)
N4—C141.3340 (18)C9—H90.9300
O1—C11.3643 (15)C10—H100.9300
O1—C151.4171 (18)C12—C131.363 (2)
C1—C61.3821 (18)C12—H120.9300
C1—C21.3838 (18)C13—C141.361 (2)
C2—C31.3826 (18)C13—H130.9300
C2—H20.9300C14—H140.9300
C3—C41.3928 (17)C15—H15A0.9600
C3—C111.4872 (18)C15—H15B0.9600
C4—C51.3867 (17)C15—H15C0.9600
C8—N1—C7116.21 (12)N1—C8—H8118.3
C10—N2—C7116.10 (12)C9—C8—H8118.3
C12—N3—C11116.16 (13)C10—C9—C8115.66 (13)
C11—N4—C14115.93 (12)C10—C9—H9122.2
C1—O1—C15117.79 (11)C8—C9—H9122.2
O1—C1—C6124.49 (12)N2—C10—C9123.39 (13)
O1—C1—C2115.47 (11)N2—C10—H10118.3
C6—C1—C2120.03 (11)C9—C10—H10118.3
C3—C2—C1120.49 (12)N4—C11—N3125.60 (12)
C3—C2—H2119.8N4—C11—C3117.35 (11)
C1—C2—H2119.8N3—C11—C3117.04 (11)
C2—C3—C4119.74 (12)N3—C12—C13122.78 (14)
C2—C3—C11119.55 (11)N3—C12—H12118.6
C4—C3—C11120.71 (11)C13—C12—H12118.6
C5—C4—C3119.83 (11)C14—C13—C12116.48 (14)
C5—C4—H4120.1C14—C13—H13121.8
C3—C4—H4120.1C12—C13—H13121.8
C4—C5—C6120.04 (11)N4—C14—C13123.02 (15)
C4—C5—C7120.87 (11)N4—C14—H14118.5
C6—C5—C7119.09 (11)C13—C14—H14118.5
C1—C6—C5119.87 (12)O1—C15—H15A109.5
C1—C6—H6120.1O1—C15—H15B109.5
C5—C6—H6120.1H15A—C15—H15B109.5
N1—C7—N2125.18 (12)O1—C15—H15C109.5
N1—C7—C5117.74 (11)H15A—C15—H15C109.5
N2—C7—C5117.07 (11)H15B—C15—H15C109.5
N1—C8—C9123.44 (14)
C15—O1—C1—C6−0.5 (2)C6—C5—C7—N1168.58 (12)
C15—O1—C1—C2178.92 (13)C4—C5—C7—N2167.50 (12)
O1—C1—C2—C3−178.88 (12)C6—C5—C7—N2−11.89 (18)
C6—C1—C2—C30.6 (2)C7—N1—C8—C91.4 (2)
C1—C2—C3—C4−0.05 (19)N1—C8—C9—C10−0.6 (3)
C1—C2—C3—C11179.97 (12)C7—N2—C10—C90.5 (2)
C2—C3—C4—C5−0.56 (18)C8—C9—C10—N2−0.4 (2)
C11—C3—C4—C5179.41 (11)C14—N4—C11—N31.3 (2)
C3—C4—C5—C60.63 (18)C14—N4—C11—C3−179.78 (13)
C3—C4—C5—C7−178.76 (11)C12—N3—C11—N4−0.9 (2)
O1—C1—C6—C5178.91 (12)C12—N3—C11—C3−179.84 (13)
C2—C1—C6—C5−0.52 (19)C2—C3—C11—N4−166.49 (13)
C4—C5—C6—C1−0.10 (18)C4—C3—C11—N413.54 (18)
C7—C5—C6—C1179.31 (12)C2—C3—C11—N312.55 (18)
C8—N1—C7—N2−1.3 (2)C4—C3—C11—N3−167.43 (12)
C8—N1—C7—C5178.20 (13)C11—N3—C12—C13−0.5 (2)
C10—N2—C7—N10.4 (2)N3—C12—C13—C141.4 (3)
C10—N2—C7—C5−179.09 (13)C11—N4—C14—C13−0.2 (2)
C4—C5—C7—N1−12.03 (18)C12—C13—C14—N4−1.0 (2)
D—H···AD—HH···AD···AD—H···A
C9—H9···N4i0.932.693.597 (2)166
C15—H15B···N3ii0.962.693.547 (2)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C9—H9⋯N4i 0.932.693.597 (2)166
C15—H15B⋯N3ii 0.962.693.547 (2)149

Symmetry codes: (i) ; (ii) .

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