Literature DB >> 23476524

2-{(E)-4-[4-(Trifluoro-meth-yl)phen-oxy]but-2-en-yloxy}phenyl N-methyl-carbamate.

Hong-Ju Ma1, Meng-Han Xu, Jian-Hua Zhang, Jian-Hong Li, Jun Ning.   

Abstract

In the title compound, C19H18F3NO4, which was designed and synthesized as a dual-site inhibitor of insect AChE (acetyl-cholinesterase), the dihedral angle between the methyl-carbamate group and the benzene ring is 72.47 (6)°. In the crystal, inversion dimers are linked by pairs of N-H⋯O hydrogen bonds.

Entities:  

Year:  2013        PMID: 23476524      PMCID: PMC3588498          DOI: 10.1107/S1600536813001347

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to multivalent ligand-receptor inter­actions and their pharmaceutical applications, see: Carlier et al. (1999 ▶); Hu et al. (2002 ▶); Kitov et al. (2000 ▶); Kopytek et al. (2000 ▶); Kryger et al. (1999 ▶); Lee & Lee (1995 ▶); Luedtke et al. (2003 ▶); Mammen et al. (1998 ▶); Pang et al. (1996 ▶). For agrochemical applications of the cluster effect, see: Ma et al. (2010 ▶); Zhao et al. (2008 ▶, 2009 ▶). For the structure of AChE from Torpedo californica (TcAChe), see: Sussman et al. (1991 ▶); Harel et al. (1993 ▶).

Experimental

Crystal data

C19H18F3NO4 M = 381.34 Monoclinic, a = 12.413 (3) Å b = 9.3936 (19) Å c = 16.202 (3) Å β = 111.65 (3)° V = 1755.9 (6) Å3 Z = 4 Cu Kα radiation μ = 1.05 mm−1 T = 173 K 0.47 × 0.30 × 0.25 mm

Data collection

Rigaku R-AXIS RAPID IP area-detector diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.639, T max = 0.780 11613 measured reflections 3163 independent reflections 2615 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.107 S = 1.07 3163 reflections 274 parameters 60 restraints H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.22 e Å−3 Data collection: RAPID-AUTO (Rigaku 2001 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813001347/mw2102sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813001347/mw2102Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813001347/mw2102Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18F3NO4F(000) = 792
Mr = 381.34Dx = 1.443 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 468 reflections
a = 12.413 (3) Åθ = 2.2–68.3°
b = 9.3936 (19) ŵ = 1.05 mm1
c = 16.202 (3) ÅT = 173 K
β = 111.65 (3)°Block, colorless
V = 1755.9 (6) Å30.47 × 0.30 × 0.25 mm
Z = 4
Rigaku R-AXIS RAPID IP area-detector diffractometer3163 independent reflections
Radiation source: rotating anode2615 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω scans at fixed χ = 45°θmax = 68.2°, θmin = 3.8°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −14→14
Tmin = 0.639, Tmax = 0.780k = −11→10
11613 measured reflectionsl = −18→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.0381P)2 + 0.8611P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
3163 reflectionsΔρmax = 0.29 e Å3
274 parametersΔρmin = −0.22 e Å3
60 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0033 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F10.4769 (4)−0.2372 (3)0.2853 (4)0.0698 (14)0.710 (12)
F20.4529 (5)−0.0522 (5)0.2121 (3)0.0731 (13)0.710 (12)
F30.5816 (4)−0.0554 (8)0.3412 (5)0.090 (2)0.710 (12)
F1'0.5251 (13)−0.2132 (15)0.3448 (14)0.109 (5)0.290 (12)
F2'0.4491 (9)−0.111 (2)0.2122 (6)0.111 (5)0.290 (12)
F3'0.5655 (11)−0.0074 (18)0.3219 (13)0.092 (5)0.290 (12)
O10.13692 (11)0.11336 (15)0.41856 (9)0.0376 (4)
O2−0.17712 (11)0.32576 (15)0.48990 (9)0.0348 (3)
O30.02201 (12)0.28785 (14)0.67050 (9)0.0367 (4)
O4−0.03869 (11)0.50607 (14)0.60863 (9)0.0313 (3)
N10.12414 (13)0.41620 (18)0.60530 (11)0.0336 (4)
H10.12420.49450.57550.040*
C10.47480 (19)−0.0960 (2)0.29620 (17)0.0477 (6)
C20.38579 (17)−0.0443 (2)0.32947 (14)0.0360 (5)
C30.27526 (17)−0.1023 (2)0.29649 (13)0.0360 (5)
H30.2584−0.17730.25430.043*
C40.18957 (17)−0.0526 (2)0.32412 (13)0.0332 (5)
H40.1141−0.09300.30090.040*
C50.21432 (16)0.0570 (2)0.38617 (13)0.0318 (4)
C60.32588 (18)0.1133 (2)0.42067 (15)0.0422 (5)
H60.34370.18680.46400.051*
C70.41034 (18)0.0630 (2)0.39219 (15)0.0439 (5)
H70.48620.10220.41580.053*
C80.01688 (16)0.0769 (2)0.37353 (13)0.0354 (5)
H8A0.0055−0.02640.37920.043*
H8B−0.00810.10050.30960.043*
C9−0.05238 (17)0.1595 (2)0.41472 (13)0.0329 (5)
H9−0.01820.24160.44850.039*
C10−0.15720 (18)0.1256 (2)0.40707 (14)0.0381 (5)
H10−0.18770.04120.37450.046*
C11−0.23549 (17)0.2024 (2)0.44281 (13)0.0337 (5)
H11A−0.30740.23080.39350.040*
H11B−0.25690.13920.48320.040*
C12−0.22437 (16)0.3914 (2)0.54436 (12)0.0300 (4)
C13−0.33741 (17)0.3764 (2)0.53971 (13)0.0354 (5)
H13−0.38930.31490.49670.042*
C14−0.37483 (18)0.4512 (2)0.59798 (14)0.0394 (5)
H14−0.45230.44020.59480.047*
C15−0.30069 (18)0.5415 (2)0.66040 (14)0.0392 (5)
H15−0.32710.59220.70010.047*
C16−0.18725 (17)0.5581 (2)0.66513 (13)0.0347 (5)
H16−0.13600.62090.70760.042*
C17−0.14992 (16)0.4832 (2)0.60820 (12)0.0296 (4)
C180.03597 (16)0.3915 (2)0.63119 (12)0.0290 (4)
C190.22029 (18)0.3175 (2)0.62487 (16)0.0446 (6)
H19A0.28180.36110.60910.067*
H19B0.19360.23000.59040.067*
H19C0.25040.29470.68840.067*
U11U22U33U12U13U23
F10.082 (2)0.0421 (13)0.117 (3)0.0125 (13)0.073 (2)0.0034 (16)
F20.084 (3)0.083 (2)0.077 (2)0.0261 (19)0.059 (2)0.019 (2)
F30.0276 (13)0.136 (5)0.100 (3)−0.001 (2)0.0170 (15)−0.051 (3)
F1'0.099 (7)0.091 (7)0.172 (12)0.058 (6)0.092 (8)0.046 (7)
F2'0.038 (4)0.192 (13)0.093 (7)−0.003 (6)0.011 (4)−0.102 (8)
F3'0.065 (7)0.090 (7)0.159 (11)−0.039 (6)0.087 (8)−0.045 (7)
O10.0312 (7)0.0435 (8)0.0390 (8)−0.0012 (6)0.0141 (6)−0.0093 (7)
O20.0333 (7)0.0358 (8)0.0412 (8)−0.0074 (6)0.0207 (6)−0.0109 (6)
O30.0369 (8)0.0314 (8)0.0423 (8)0.0002 (6)0.0151 (6)0.0082 (6)
O40.0279 (7)0.0274 (7)0.0399 (7)0.0004 (6)0.0139 (6)0.0013 (6)
N10.0307 (8)0.0351 (9)0.0369 (9)0.0017 (7)0.0148 (7)0.0039 (8)
C10.0362 (12)0.0442 (13)0.0672 (16)0.0019 (11)0.0243 (11)0.0044 (13)
C20.0302 (10)0.0354 (11)0.0437 (11)0.0024 (9)0.0151 (9)0.0051 (9)
C30.0347 (10)0.0354 (11)0.0385 (11)−0.0001 (9)0.0141 (9)−0.0032 (9)
C40.0300 (10)0.0346 (11)0.0344 (10)−0.0010 (8)0.0111 (8)−0.0010 (9)
C50.0302 (10)0.0330 (10)0.0327 (10)0.0027 (8)0.0121 (8)0.0035 (8)
C60.0342 (11)0.0405 (12)0.0489 (12)−0.0047 (10)0.0118 (9)−0.0112 (10)
C70.0285 (10)0.0434 (12)0.0573 (14)−0.0043 (9)0.0130 (10)−0.0055 (11)
C80.0313 (10)0.0384 (11)0.0380 (11)−0.0031 (9)0.0145 (9)−0.0050 (9)
C90.0347 (10)0.0314 (10)0.0335 (10)−0.0015 (9)0.0137 (8)−0.0049 (8)
C100.0408 (11)0.0331 (11)0.0439 (12)−0.0048 (9)0.0200 (9)−0.0095 (9)
C110.0334 (10)0.0322 (10)0.0367 (11)−0.0048 (8)0.0142 (8)−0.0041 (8)
C120.0303 (10)0.0313 (10)0.0315 (10)0.0019 (8)0.0147 (8)0.0007 (8)
C130.0297 (10)0.0400 (12)0.0382 (11)−0.0026 (9)0.0145 (9)−0.0030 (9)
C140.0315 (10)0.0457 (13)0.0463 (12)0.0046 (9)0.0205 (9)0.0035 (10)
C150.0408 (12)0.0441 (12)0.0378 (11)0.0078 (10)0.0206 (10)0.0003 (10)
C160.0379 (11)0.0333 (11)0.0325 (10)0.0025 (9)0.0125 (9)−0.0001 (9)
C170.0279 (9)0.0291 (10)0.0331 (10)0.0013 (8)0.0129 (8)0.0029 (8)
C180.0271 (9)0.0294 (10)0.0284 (9)−0.0008 (8)0.0077 (8)−0.0031 (8)
C190.0319 (11)0.0475 (13)0.0549 (13)0.0068 (10)0.0168 (10)0.0000 (11)
F1—C11.339 (3)C6—H60.9500
F2—C11.351 (4)C7—H70.9500
F3—C11.312 (5)C8—C91.487 (3)
F1'—C11.363 (7)C8—H8A0.9900
F2'—C11.287 (8)C8—H8B0.9900
F3'—C11.337 (9)C9—C101.300 (3)
O1—C51.361 (2)C9—H90.9500
O1—C81.438 (2)C10—C111.488 (3)
O2—C121.373 (2)C10—H100.9500
O2—C111.429 (2)C11—H11A0.9900
O3—C181.210 (2)C11—H11B0.9900
O4—C181.379 (2)C12—C131.384 (3)
O4—C171.395 (2)C12—C171.401 (3)
N1—C181.329 (2)C13—C141.387 (3)
N1—C191.451 (3)C13—H130.9500
N1—H10.8800C14—C151.379 (3)
C1—C21.479 (3)C14—H140.9500
C2—C71.383 (3)C15—C161.390 (3)
C2—C31.387 (3)C15—H150.9500
C3—C41.379 (3)C16—C171.369 (3)
C3—H30.9500C16—H160.9500
C4—C51.392 (3)C19—H19A0.9800
C4—H40.9500C19—H19B0.9800
C5—C61.393 (3)C19—H19C0.9800
C6—C71.376 (3)
C5—O1—C8117.30 (15)H8A—C8—H8B108.4
C12—O2—C11117.06 (15)C10—C9—C8123.63 (19)
C18—O4—C17116.65 (14)C10—C9—H9118.2
C18—N1—C19121.73 (18)C8—C9—H9118.2
C18—N1—H1119.1C9—C10—C11128.22 (19)
C19—N1—H1119.1C9—C10—H10115.9
F2'—C1—F3'104.5 (10)C11—C10—H10115.9
F3—C1—F1107.3 (4)O2—C11—C10108.98 (16)
F3—C1—F2104.9 (4)O2—C11—H11A109.9
F1—C1—F2100.1 (3)C10—C11—H11A109.9
F2'—C1—F1'113.7 (8)O2—C11—H11B109.9
F3'—C1—F1'99.7 (8)C10—C11—H11B109.9
F2'—C1—C2119.7 (6)H11A—C11—H11B108.3
F3—C1—C2116.1 (4)O2—C12—C13125.72 (17)
F3'—C1—C2109.8 (7)O2—C12—C17115.42 (16)
F1—C1—C2115.2 (2)C13—C12—C17118.84 (18)
F2—C1—C2111.6 (3)C12—C13—C14119.89 (19)
F1'—C1—C2107.4 (5)C12—C13—H13120.1
C7—C2—C3119.2 (2)C14—C13—H13120.1
C7—C2—C1121.03 (19)C15—C14—C13120.68 (19)
C3—C2—C1119.8 (2)C15—C14—H14119.7
C4—C3—C2120.9 (2)C13—C14—H14119.7
C4—C3—H3119.5C14—C15—C16119.8 (2)
C2—C3—H3119.5C14—C15—H15120.1
C3—C4—C5119.58 (19)C16—C15—H15120.1
C3—C4—H4120.2C17—C16—C15119.53 (19)
C5—C4—H4120.2C17—C16—H16120.2
O1—C5—C4124.58 (18)C15—C16—H16120.2
O1—C5—C6115.86 (18)C16—C17—O4119.88 (17)
C4—C5—C6119.54 (19)C16—C17—C12121.22 (18)
C7—C6—C5120.2 (2)O4—C17—C12118.71 (17)
C7—C6—H6119.9O3—C18—N1126.96 (18)
C5—C6—H6119.9O3—C18—O4123.69 (17)
C6—C7—C2120.6 (2)N1—C18—O4109.33 (16)
C6—C7—H7119.7N1—C19—H19A109.5
C2—C7—H7119.7N1—C19—H19B109.5
O1—C8—C9108.10 (16)H19A—C19—H19B109.5
O1—C8—H8A110.1N1—C19—H19C109.5
C9—C8—H8A110.1H19A—C19—H19C109.5
O1—C8—H8B110.1H19B—C19—H19C109.5
C9—C8—H8B110.1
F2'—C1—C2—C7−132.8 (10)C5—O1—C8—C9−175.09 (16)
F3—C1—C2—C712.8 (5)O1—C8—C9—C10−160.9 (2)
F3'—C1—C2—C7−11.9 (10)C8—C9—C10—C11−177.9 (2)
F1—C1—C2—C7139.4 (4)C12—O2—C11—C10−165.39 (16)
F2—C1—C2—C7−107.3 (3)C9—C10—C11—O2−0.2 (3)
F1'—C1—C2—C795.6 (11)C11—O2—C12—C13−19.5 (3)
F2'—C1—C2—C346.2 (10)C11—O2—C12—C17161.91 (17)
F3—C1—C2—C3−168.2 (4)O2—C12—C13—C14−178.79 (18)
F3'—C1—C2—C3167.0 (10)C17—C12—C13—C14−0.2 (3)
F1—C1—C2—C3−41.6 (4)C12—C13—C14—C150.4 (3)
F2—C1—C2—C371.7 (3)C13—C14—C15—C160.1 (3)
F1'—C1—C2—C3−85.4 (11)C14—C15—C16—C17−0.7 (3)
C7—C2—C3—C41.2 (3)C15—C16—C17—O4175.88 (17)
C1—C2—C3—C4−177.75 (19)C15—C16—C17—C120.8 (3)
C2—C3—C4—C5−0.2 (3)C18—O4—C17—C16117.69 (19)
C8—O1—C5—C4−12.6 (3)C18—O4—C17—C12−67.1 (2)
C8—O1—C5—C6169.01 (18)O2—C12—C17—C16178.33 (17)
C3—C4—C5—O1−179.48 (18)C13—C12—C17—C16−0.4 (3)
C3—C4—C5—C6−1.1 (3)O2—C12—C17—O43.2 (3)
O1—C5—C6—C7179.85 (19)C13—C12—C17—O4−175.48 (17)
C4—C5—C6—C71.3 (3)C19—N1—C18—O3−1.9 (3)
C5—C6—C7—C2−0.3 (3)C19—N1—C18—O4176.30 (17)
C3—C2—C7—C6−1.0 (3)C17—O4—C18—O3−18.9 (3)
C1—C2—C7—C6178.0 (2)C17—O4—C18—N1162.82 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.882.223.072 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.882.223.072 (2)163

Symmetry code: (i) .

  10 in total

1.  Synthesis and insecticidal activity of novel carbamate derivatives as potential dual-binding site acetylcholinesterase inhibitors.

Authors:  Hong-Ju Ma; Ru-Liang Xie; Qian-Fei Zhao; Xiang-Dong Mei; Jun Ning
Journal:  J Agric Food Chem       Date:  2010-11-29       Impact factor: 5.279

2.  Atomic structure of acetylcholinesterase from Torpedo californica: a prototypic acetylcholine-binding protein.

Authors:  J L Sussman; M Harel; F Frolow; C Oefner; A Goldman; L Toker; I Silman
Journal:  Science       Date:  1991-08-23       Impact factor: 47.728

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands.

Authors:  P I Kitov; J M Sadowska; G Mulvey; G D Armstrong; H Ling; N S Pannu; R J Read; D R Bundle
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

5.  Chemically induced dimerization of dihydrofolate reductase by a homobifunctional dimer of methotrexate.

Authors:  S J Kopytek; R F Standaert; J C Dyer; J C Hu
Journal:  Chem Biol       Date:  2000-05

6.  Quaternary ligand binding to aromatic residues in the active-site gorge of acetylcholinesterase.

Authors:  M Harel; I Schalk; L Ehret-Sabatier; F Bouet; M Goeldner; C Hirth; P H Axelsen; I Silman; J L Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-01       Impact factor: 11.205

7.  Homodimeric tacrine congeners as acetylcholinesterase inhibitors.

Authors:  Ming-Kuan Hu; Li-Ju Wu; George Hsiao; Mao-Hsiung Yen
Journal:  J Med Chem       Date:  2002-05-23       Impact factor: 7.446

8.  Heterodimeric tacrine-based acetylcholinesterase inhibitors: investigating ligand-peripheral site interactions.

Authors:  P R Carlier; E S Chow; Y Han; J Liu; J El Yazal; Y P Pang
Journal:  J Med Chem       Date:  1999-10-07       Impact factor: 7.446

9.  RNA-ligand interactions: affinity and specificity of aminoglycoside dimers and acridine conjugates to the HIV-1 Rev response element.

Authors:  Nathan W Luedtke; Qi Liu; Yitzhak Tor
Journal:  Biochemistry       Date:  2003-10-07       Impact factor: 3.162

10.  Highly potent, selective, and low cost bis-tetrahydroaminacrine inhibitors of acetylcholinesterase. Steps toward novel drugs for treating Alzheimer's disease.

Authors:  Y P Pang; P Quiram; T Jelacic; F Hong; S Brimijoin
Journal:  J Biol Chem       Date:  1996-09-27       Impact factor: 5.157

  10 in total

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